miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 5' -55.5 NC_001798.1 + 82304 0.67 0.896509
Target:  5'- uUGGGUcguGCcCGGAGGCccgguugcccgccGCCCCCCAc -3'
miRNA:   3'- gACCUAcu-UGaGCUUUCG-------------CGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 84195 0.67 0.861615
Target:  5'- uUGGucu-GCUCcgccguGAucGCGCCCCCCGg -3'
miRNA:   3'- gACCuacuUGAG------CUuuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 84477 0.66 0.920883
Target:  5'- aUGcGcUGAACgagacccUCGAAcGCGUCCCCCGg -3'
miRNA:   3'- gAC-CuACUUG-------AGCUUuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 85882 0.66 0.909781
Target:  5'- --uGAUGAACUgGAAGgacuGCGCCCgCCu -3'
miRNA:   3'- gacCUACUUGAgCUUU----CGCGGGgGGu -5'
5159 5' -55.5 NC_001798.1 + 87971 0.7 0.7471
Target:  5'- gCUuGcgGGGCUUGGAcGCGCCUCCCGg -3'
miRNA:   3'- -GAcCuaCUUGAGCUUuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 90485 0.67 0.890505
Target:  5'- -cGGGUGGugGCgUCGA---CGCCCCCCu -3'
miRNA:   3'- gaCCUACU--UG-AGCUuucGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 93181 0.68 0.843465
Target:  5'- cCUGGAguccaucGugUCGAuggcggucuuugacGAGcCGCCCCCCGa -3'
miRNA:   3'- -GACCUac-----UugAGCU--------------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 96156 0.67 0.890505
Target:  5'- -cGGGUGAcucGCcauggCGGccGCGCCCCCg- -3'
miRNA:   3'- gaCCUACU---UGa----GCUuuCGCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 98272 0.72 0.594904
Target:  5'- -cGGG-GAGCUUGAGuuGCGCCgCCCCGa -3'
miRNA:   3'- gaCCUaCUUGAGCUUu-CGCGG-GGGGU- -5'
5159 5' -55.5 NC_001798.1 + 99062 0.67 0.869166
Target:  5'- aUGGGgauAUUCGAGGaccGCGCCCCCg- -3'
miRNA:   3'- gACCUacuUGAGCUUU---CGCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 115109 1.09 0.003261
Target:  5'- gCUGGAUGAACUCGAAAGCGCCCCCCAg -3'
miRNA:   3'- -GACCUACUUGAGCUUUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 116065 0.66 0.903591
Target:  5'- gCUGGucucguacaucGUGAccuacCUCGggGGCGaCCuCCCCGa -3'
miRNA:   3'- -GACC-----------UACUu----GAGCuuUCGC-GG-GGGGU- -5'
5159 5' -55.5 NC_001798.1 + 122734 0.66 0.921443
Target:  5'- cCUGGA-GAACcugaugcgcgccUCGAGGGgacCGCCCCCg- -3'
miRNA:   3'- -GACCUaCUUG------------AGCUUUC---GCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 123866 0.67 0.869166
Target:  5'- gUGGcccacGAGCUCGAcGGCGCCUaccugguaCCCAc -3'
miRNA:   3'- gACCua---CUUGAGCUuUCGCGGG--------GGGU- -5'
5159 5' -55.5 NC_001798.1 + 129332 0.7 0.7471
Target:  5'- cCUGGA-GGACggcCGcGGAGCGCCCgCCGg -3'
miRNA:   3'- -GACCUaCUUGa--GC-UUUCGCGGGgGGU- -5'
5159 5' -55.5 NC_001798.1 + 138233 0.73 0.564339
Target:  5'- -cGGG-GGugUCGAucAGGUGCCCCCCc -3'
miRNA:   3'- gaCCUaCUugAGCU--UUCGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 141407 0.73 0.574489
Target:  5'- -gGGAgGugUUUGAGAGCGCCCCCUu -3'
miRNA:   3'- gaCCUaCuuGAGCUUUCGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 147166 0.67 0.874323
Target:  5'- -cGGGUagccgcccggcgccGGGCg-GAAGGCGUCCCCCGc -3'
miRNA:   3'- gaCCUA--------------CUUGagCUUUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 151177 0.67 0.897164
Target:  5'- -gGGGUGGGCgacagggcgCGGAccguGUGuCCCCCCAg -3'
miRNA:   3'- gaCCUACUUGa--------GCUUu---CGC-GGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 152303 0.66 0.921443
Target:  5'- -aGGGUaGACUCGAGacGGCGgCCCgCGg -3'
miRNA:   3'- gaCCUAcUUGAGCUU--UCGCgGGGgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.