miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 5' -55.5 NC_001798.1 + 72983 0.67 0.861615
Target:  5'- -aGGAggUGAuggcccacgcgAC-CGAGGacGCGCCCCCCAg -3'
miRNA:   3'- gaCCU--ACU-----------UGaGCUUU--CGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 84195 0.67 0.861615
Target:  5'- uUGGucu-GCUCcgccguGAucGCGCCCCCCGg -3'
miRNA:   3'- gACCuacuUGAG------CUuuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 32832 0.68 0.849102
Target:  5'- -aGGggGAgcuaacACUCGGcuugcugcccgaaggAAGcCGCCCCCCAc -3'
miRNA:   3'- gaCCuaCU------UGAGCU---------------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 66618 0.68 0.845893
Target:  5'- -aGcAUGAGCgcgggcucgcggUCGAcGGCGUCCCCCAg -3'
miRNA:   3'- gaCcUACUUG------------AGCUuUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 93181 0.68 0.843465
Target:  5'- cCUGGAguccaucGugUCGAuggcggucuuugacGAGcCGCCCCCCGa -3'
miRNA:   3'- -GACCUac-----UugAGCU--------------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 50402 0.69 0.794261
Target:  5'- -aGGAUGuGCgacCGGGcggcGCGCCCCCCc -3'
miRNA:   3'- gaCCUACuUGa--GCUUu---CGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 49266 0.69 0.766335
Target:  5'- aCUGGggGGAUgcgcaCGuccccGAGCGCUCCCCGa -3'
miRNA:   3'- -GACCuaCUUGa----GCu----UUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 15375 0.69 0.766335
Target:  5'- -cGGccGUGGGCgcggCGGAGGCGCCCaCCGg -3'
miRNA:   3'- gaCC--UACUUGa---GCUUUCGCGGGgGGU- -5'
5159 5' -55.5 NC_001798.1 + 75768 0.7 0.7471
Target:  5'- cCUGGAgc-GCUCGc--GCGCCCaCCCGa -3'
miRNA:   3'- -GACCUacuUGAGCuuuCGCGGG-GGGU- -5'
5159 5' -55.5 NC_001798.1 + 87971 0.7 0.7471
Target:  5'- gCUuGcgGGGCUUGGAcGCGCCUCCCGg -3'
miRNA:   3'- -GAcCuaCUUGAGCUUuCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 129332 0.7 0.7471
Target:  5'- cCUGGA-GGACggcCGcGGAGCGCCCgCCGg -3'
miRNA:   3'- -GACCUaCUUGa--GC-UUUCGCGGGgGGU- -5'
5159 5' -55.5 NC_001798.1 + 47230 0.71 0.687246
Target:  5'- -gGGGUGGGCgugUCGuuGGGCGgCCCCCGg -3'
miRNA:   3'- gaCCUACUUG---AGCu-UUCGCgGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 49860 0.71 0.677055
Target:  5'- -cGGAgGAACcCG-GGGCGCCCCUCAc -3'
miRNA:   3'- gaCCUaCUUGaGCuUUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 98272 0.72 0.594904
Target:  5'- -cGGG-GAGCUUGAGuuGCGCCgCCCCGa -3'
miRNA:   3'- gaCCUaCUUGAGCUUu-CGCGG-GGGGU- -5'
5159 5' -55.5 NC_001798.1 + 76687 0.73 0.574489
Target:  5'- -cGGcgGAGCUCGcuccgGAGGCGCgCUCCCGg -3'
miRNA:   3'- gaCCuaCUUGAGC-----UUUCGCG-GGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 141407 0.73 0.574489
Target:  5'- -gGGAgGugUUUGAGAGCGCCCCCUu -3'
miRNA:   3'- gaCCUaCuuGAGCUUUCGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 138233 0.73 0.564339
Target:  5'- -cGGG-GGugUCGAucAGGUGCCCCCCc -3'
miRNA:   3'- gaCCUaCUugAGCU--UUCGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 60044 0.73 0.544191
Target:  5'- -aGGAaGAACUUGAGGGU-CCCCCCGc -3'
miRNA:   3'- gaCCUaCUUGAGCUUUCGcGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 4116 0.78 0.315892
Target:  5'- cCUGGgcGGGCUCGGccgGGGCGCCgCCCCc -3'
miRNA:   3'- -GACCuaCUUGAGCU---UUCGCGG-GGGGu -5'
5159 5' -55.5 NC_001798.1 + 115109 1.09 0.003261
Target:  5'- gCUGGAUGAACUCGAAAGCGCCCCCCAg -3'
miRNA:   3'- -GACCUACUUGAGCUUUCGCGGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.