miRNA display CGI


Results 41 - 60 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 30055 0.66 0.774637
Target:  5'- cGGGGGACAggGGGGgaGACGagggGUCGGa -3'
miRNA:   3'- -CCUCCUGUggCUCCggCUGCa---CGGCC- -5'
5160 5' -60 NC_001798.1 + 77653 0.66 0.774637
Target:  5'- uGAGGcCGCCGucGCCGACcUGaCGGc -3'
miRNA:   3'- cCUCCuGUGGCucCGGCUGcACgGCC- -5'
5160 5' -60 NC_001798.1 + 95459 0.66 0.774637
Target:  5'- cGAGGACu----GGCUGGCGcUGCUGGa -3'
miRNA:   3'- cCUCCUGuggcuCCGGCUGC-ACGGCC- -5'
5160 5' -60 NC_001798.1 + 108652 0.66 0.774637
Target:  5'- cGAGaGGCACCcgGAcGGCCGACGcaacgcGCCGc -3'
miRNA:   3'- cCUC-CUGUGG--CU-CCGGCUGCa-----CGGCc -5'
5160 5' -60 NC_001798.1 + 154131 0.67 0.765682
Target:  5'- cGGGGACcCCGGcggcgggacauGGCgGGCG-GCUGGg -3'
miRNA:   3'- cCUCCUGuGGCU-----------CCGgCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 70319 0.67 0.765682
Target:  5'- cGGucGGCccgGCgGAGGCgCgGGCGUGCUGGc -3'
miRNA:   3'- -CCucCUG---UGgCUCCG-G-CUGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 111680 0.67 0.765682
Target:  5'- cGGGGACACaacacGGUCGAUGUGCUu- -3'
miRNA:   3'- cCUCCUGUGgcu--CCGGCUGCACGGcc -5'
5160 5' -60 NC_001798.1 + 79472 0.67 0.764781
Target:  5'- cGAGGGC-CaCGAGGUCGacccgcagcugcuGCGccGCCGGg -3'
miRNA:   3'- cCUCCUGuG-GCUCCGGC-------------UGCa-CGGCC- -5'
5160 5' -60 NC_001798.1 + 68464 0.67 0.75662
Target:  5'- cGGGGAUugCGA-GCUcGCG-GCCGGg -3'
miRNA:   3'- cCUCCUGugGCUcCGGcUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 29980 0.67 0.75662
Target:  5'- cGGGGGACccCCGuGGGCCG-UGcGCCGc -3'
miRNA:   3'- -CCUCCUGu-GGC-UCCGGCuGCaCGGCc -5'
5160 5' -60 NC_001798.1 + 153007 0.67 0.75662
Target:  5'- cGGGGcGGuCGCCGGGGCgGA-GU-CCGGg -3'
miRNA:   3'- -CCUC-CU-GUGGCUCCGgCUgCAcGGCC- -5'
5160 5' -60 NC_001798.1 + 126121 0.67 0.75662
Target:  5'- gGGGGGACGgCGAccuGGCgGACGgauggaugaGuCCGGg -3'
miRNA:   3'- -CCUCCUGUgGCU---CCGgCUGCa--------C-GGCC- -5'
5160 5' -60 NC_001798.1 + 108123 0.67 0.75662
Target:  5'- gGGuGGugAUgGGGGUCcuggugGGCGuUGCCGGg -3'
miRNA:   3'- -CCuCCugUGgCUCCGG------CUGC-ACGGCC- -5'
5160 5' -60 NC_001798.1 + 32717 0.67 0.75662
Target:  5'- -cAGGGCACCcuGGUgGGCGcGCUGGa -3'
miRNA:   3'- ccUCCUGUGGcuCCGgCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 3790 0.67 0.747457
Target:  5'- -cGGGGCGcCCGAGGCCu-CGaaCCGGg -3'
miRNA:   3'- ccUCCUGU-GGCUCCGGcuGCacGGCC- -5'
5160 5' -60 NC_001798.1 + 52937 0.67 0.747457
Target:  5'- cGAGGAgACCGccgcccuccGGGCgcACGUGuCCGGg -3'
miRNA:   3'- cCUCCUgUGGC---------UCCGgcUGCAC-GGCC- -5'
5160 5' -60 NC_001798.1 + 96985 0.67 0.738203
Target:  5'- cGGcGGGCGgCGGGGCC-AgG-GCCGGc -3'
miRNA:   3'- -CCuCCUGUgGCUCCGGcUgCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 54700 0.67 0.738203
Target:  5'- cGAGGcCGCCGGGGUcuaCGACGcgGUgCGGa -3'
miRNA:   3'- cCUCCuGUGGCUCCG---GCUGCa-CG-GCC- -5'
5160 5' -60 NC_001798.1 + 16772 0.67 0.738203
Target:  5'- cGGGGACAcCCGAcccGCCG-CGUGuccCCGGa -3'
miRNA:   3'- cCUCCUGU-GGCUc--CGGCuGCAC---GGCC- -5'
5160 5' -60 NC_001798.1 + 154394 0.67 0.738203
Target:  5'- gGGGGGGCGCgaAGGCgGGCGgcgGCggCGGg -3'
miRNA:   3'- -CCUCCUGUGgcUCCGgCUGCa--CG--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.