miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 74392 0.66 0.800777
Target:  5'- ---cGGC-CCgGGGGCCGugGcGCCGGc -3'
miRNA:   3'- ccucCUGuGG-CUCCGGCugCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 117673 0.66 0.800777
Target:  5'- cGGGGACG-CGcGGCCGGCGgcguguacGCgGGg -3'
miRNA:   3'- cCUCCUGUgGCuCCGGCUGCa-------CGgCC- -5'
5160 5' -60 NC_001798.1 + 4088 0.66 0.792192
Target:  5'- cGGGGGuccGgGCCGGGGCgGgcucggcccuggGCGggcucgGCCGGg -3'
miRNA:   3'- -CCUCC---UgUGGCUCCGgC------------UGCa-----CGGCC- -5'
5160 5' -60 NC_001798.1 + 22776 0.66 0.792192
Target:  5'- cGGGGGACGucuCCG-GGCCGcgGCGgagacGaCCGGc -3'
miRNA:   3'- -CCUCCUGU---GGCuCCGGC--UGCa----C-GGCC- -5'
5160 5' -60 NC_001798.1 + 63234 0.66 0.792192
Target:  5'- cGGuGGACA-UGAGGCUGAgGggaaaGCUGGc -3'
miRNA:   3'- -CCuCCUGUgGCUCCGGCUgCa----CGGCC- -5'
5160 5' -60 NC_001798.1 + 153247 0.66 0.792192
Target:  5'- cGGAGGAC-CCGcGcGCCGcCGccGCCGc -3'
miRNA:   3'- -CCUCCUGuGGCuC-CGGCuGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 36111 0.66 0.788721
Target:  5'- gGGGGGGCccggcugcgucucGCCGcgaucccgccggugGGGCgCGGCGgcgGUCGGg -3'
miRNA:   3'- -CCUCCUG-------------UGGC--------------UCCG-GCUGCa--CGGCC- -5'
5160 5' -60 NC_001798.1 + 102654 0.66 0.784353
Target:  5'- cGGAGGGgccggggcgcccgaUGCCGAaacgggguucauaucGGCCG--GUGCCGGa -3'
miRNA:   3'- -CCUCCU--------------GUGGCU---------------CCGGCugCACGGCC- -5'
5160 5' -60 NC_001798.1 + 17983 0.66 0.783476
Target:  5'- gGGGGGGCugCGcGGCCcggaacaggagGAUGgccGCUGGc -3'
miRNA:   3'- -CCUCCUGugGCuCCGG-----------CUGCa--CGGCC- -5'
5160 5' -60 NC_001798.1 + 111286 0.66 0.783476
Target:  5'- --cGGGCGCgGgaacguacAGGCCGugGcGCUGGa -3'
miRNA:   3'- ccuCCUGUGgC--------UCCGGCugCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 127476 0.66 0.783476
Target:  5'- cGAGaccaACACCcacGGCCuggcguauGACGUGCCGGa -3'
miRNA:   3'- cCUCc---UGUGGcu-CCGG--------CUGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 24998 0.66 0.783476
Target:  5'- uGGccGACACCGucGCCG-CG-GCCGa -3'
miRNA:   3'- -CCucCUGUGGCucCGGCuGCaCGGCc -5'
5160 5' -60 NC_001798.1 + 31643 0.66 0.783476
Target:  5'- cGuGGuguCugCGAGcGCgGACGcgGCCGGg -3'
miRNA:   3'- cCuCCu--GugGCUC-CGgCUGCa-CGGCC- -5'
5160 5' -60 NC_001798.1 + 34860 0.66 0.783476
Target:  5'- cGGGGGACGCCuuccGcCCGGC--GCCGGg -3'
miRNA:   3'- -CCUCCUGUGGcuc-C-GGCUGcaCGGCC- -5'
5160 5' -60 NC_001798.1 + 55944 0.66 0.783476
Target:  5'- ---cGACGCCGAuccaGGCC-ACG-GCCGGa -3'
miRNA:   3'- ccucCUGUGGCU----CCGGcUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 57148 0.66 0.783476
Target:  5'- cGAGuACAgCCGcGGGCUGGCGcccggGCCGGc -3'
miRNA:   3'- cCUCcUGU-GGC-UCCGGCUGCa----CGGCC- -5'
5160 5' -60 NC_001798.1 + 52511 0.66 0.783476
Target:  5'- gGGAcGACGCgGcGGCCGcgcgcgcCGUGCUGGc -3'
miRNA:   3'- -CCUcCUGUGgCuCCGGCu------GCACGGCC- -5'
5160 5' -60 NC_001798.1 + 39771 0.66 0.778187
Target:  5'- gGGGGGAagccgaccgccugguC-CCGAGGCgCGACcacacGCCGGu -3'
miRNA:   3'- -CCUCCU---------------GuGGCUCCG-GCUGca---CGGCC- -5'
5160 5' -60 NC_001798.1 + 95459 0.66 0.774637
Target:  5'- cGAGGACu----GGCUGGCGcUGCUGGa -3'
miRNA:   3'- cCUCCUGuggcuCCGGCUGC-ACGGCC- -5'
5160 5' -60 NC_001798.1 + 77653 0.66 0.774637
Target:  5'- uGAGGcCGCCGucGCCGACcUGaCGGc -3'
miRNA:   3'- cCUCCuGUGGCucCGGCUGcACgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.