miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 85825 0.74 0.371449
Target:  5'- gGGGGGGgGCgGGGGCgGGCGgggGCuCGGg -3'
miRNA:   3'- -CCUCCUgUGgCUCCGgCUGCa--CG-GCC- -5'
5160 5' -60 NC_001798.1 + 36039 0.74 0.371449
Target:  5'- gGGGGGugGCgGcgguGGUCGGCGUgcuGCCGGa -3'
miRNA:   3'- -CCUCCugUGgCu---CCGGCUGCA---CGGCC- -5'
5160 5' -60 NC_001798.1 + 30761 0.74 0.371449
Target:  5'- cGuGGAgGCCGAGGCgGcCGUGCgGGc -3'
miRNA:   3'- cCuCCUgUGGCUCCGgCuGCACGgCC- -5'
5160 5' -60 NC_001798.1 + 153684 0.74 0.379238
Target:  5'- cGGGGACGCgGGGGCCGcc--GCCGGc -3'
miRNA:   3'- cCUCCUGUGgCUCCGGCugcaCGGCC- -5'
5160 5' -60 NC_001798.1 + 153809 0.74 0.379238
Target:  5'- cGGGGGGCaggcgGCgGcAGGCgCGGCGUGCgGGg -3'
miRNA:   3'- -CCUCCUG-----UGgC-UCCG-GCUGCACGgCC- -5'
5160 5' -60 NC_001798.1 + 24853 0.73 0.387135
Target:  5'- cGAGGcCGCCGuGGCCGcCGUGCgCGc -3'
miRNA:   3'- cCUCCuGUGGCuCCGGCuGCACG-GCc -5'
5160 5' -60 NC_001798.1 + 42197 0.73 0.402435
Target:  5'- cGGGGcgugaaaguggaaGCGCCGcGGGUCGGCGUGCgCGGc -3'
miRNA:   3'- cCUCC-------------UGUGGC-UCCGGCUGCACG-GCC- -5'
5160 5' -60 NC_001798.1 + 23569 0.73 0.411467
Target:  5'- cGAGGGCcCCGGGGgCGGCGccccgGCCGa -3'
miRNA:   3'- cCUCCUGuGGCUCCgGCUGCa----CGGCc -5'
5160 5' -60 NC_001798.1 + 34966 0.73 0.411467
Target:  5'- cGGAGGGgGCgGccGCCGAgGUGCgGGg -3'
miRNA:   3'- -CCUCCUgUGgCucCGGCUgCACGgCC- -5'
5160 5' -60 NC_001798.1 + 16155 0.73 0.411467
Target:  5'- cGGGGGCACCGAGcGCCacgGGCGgcccGCgGGg -3'
miRNA:   3'- cCUCCUGUGGCUC-CGG---CUGCa---CGgCC- -5'
5160 5' -60 NC_001798.1 + 4347 0.73 0.419785
Target:  5'- aGAGGcgGCCGAGcGCCGGCGgggggcgcGCCGGc -3'
miRNA:   3'- cCUCCugUGGCUC-CGGCUGCa-------CGGCC- -5'
5160 5' -60 NC_001798.1 + 36487 0.73 0.428205
Target:  5'- aGGGGGCGCCGGcgcgacgcgggcGGCCGggcgggggcgcGCGgcgGCCGGg -3'
miRNA:   3'- cCUCCUGUGGCU------------CCGGC-----------UGCa--CGGCC- -5'
5160 5' -60 NC_001798.1 + 51009 0.73 0.428205
Target:  5'- uGGAGGACGagcCCGAgGGCgGugGaGUCGGg -3'
miRNA:   3'- -CCUCCUGU---GGCU-CCGgCugCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 39551 0.73 0.428205
Target:  5'- uGGGuGGCGCCGGGGCCGucCGUccgcGCCGa -3'
miRNA:   3'- cCUC-CUGUGGCUCCGGCu-GCA----CGGCc -5'
5160 5' -60 NC_001798.1 + 15190 0.73 0.428205
Target:  5'- gGGGGGugGg-GGGGCUGGCGaGCCGGg -3'
miRNA:   3'- -CCUCCugUggCUCCGGCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 8833 0.72 0.436724
Target:  5'- uGGAacGCACCGAgucuuGGUCGGCGgGCCGGg -3'
miRNA:   3'- -CCUccUGUGGCU-----CCGGCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 92969 0.72 0.445339
Target:  5'- cGGAacguGGACGCCGuGGCCcGCGcgGCCGc -3'
miRNA:   3'- -CCU----CCUGUGGCuCCGGcUGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 146481 0.72 0.445339
Target:  5'- --cGGGCuCCGGGGCCGGgcCGgGCCGGc -3'
miRNA:   3'- ccuCCUGuGGCUCCGGCU--GCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 5275 0.72 0.445339
Target:  5'- aGGAGGACGCgGAGGaggagcgaUCGACGccGCCGc -3'
miRNA:   3'- -CCUCCUGUGgCUCC--------GGCUGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 36581 0.72 0.454048
Target:  5'- cGGGGGCGCgCGGcGGCCGggcgggggcgcGCGgcgGCCGGg -3'
miRNA:   3'- cCUCCUGUG-GCU-CCGGC-----------UGCa--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.