miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 114943 1.11 0.001227
Target:  5'- uGGAGGACACCGAGGCCGACGUGCCGGu -3'
miRNA:   3'- -CCUCCUGUGGCUCCGGCUGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 90394 0.79 0.180343
Target:  5'- cGGGGGGCGCgGuuGGGCCGGCGcguucccgcgGCCGGg -3'
miRNA:   3'- -CCUCCUGUGgC--UCCGGCUGCa---------CGGCC- -5'
5160 5' -60 NC_001798.1 + 6363 0.79 0.180343
Target:  5'- gGGGGGACggGCCGggGGGCCGGgGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGC--UCCGGCUgCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 69298 0.77 0.222571
Target:  5'- cGGGGGGCGCCGGGGacggucagcccucCCG-CGcGCCGGg -3'
miRNA:   3'- -CCUCCUGUGGCUCC-------------GGCuGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 83245 0.77 0.223091
Target:  5'- cGGAGGGaccCGCCGAGGacucaCGGgGUGCUGGg -3'
miRNA:   3'- -CCUCCU---GUGGCUCCg----GCUgCACGGCC- -5'
5160 5' -60 NC_001798.1 + 78233 0.77 0.250384
Target:  5'- --uGGACGCCauccGGGCCGACGUGCacCGGg -3'
miRNA:   3'- ccuCCUGUGGc---UCCGGCUGCACG--GCC- -5'
5160 5' -60 NC_001798.1 + 3007 0.77 0.250384
Target:  5'- --cGGGCGCgGGGGCgCGGCGgGCCGGg -3'
miRNA:   3'- ccuCCUGUGgCUCCG-GCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 59557 0.76 0.280374
Target:  5'- aGAGGGgGCUGGGGCUcGCGUcGCCGGu -3'
miRNA:   3'- cCUCCUgUGGCUCCGGcUGCA-CGGCC- -5'
5160 5' -60 NC_001798.1 + 22910 0.76 0.293146
Target:  5'- cGGAGGAgAacgaagaCGAGGCCGACGacGCCGc -3'
miRNA:   3'- -CCUCCUgUg------GCUCCGGCUGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 141572 0.75 0.305696
Target:  5'- cGGAGGagcugcggcggcgGCACgCGAcGGCCGGCGUgGCCGa -3'
miRNA:   3'- -CCUCC-------------UGUG-GCU-CCGGCUGCA-CGGCc -5'
5160 5' -60 NC_001798.1 + 111057 0.75 0.306368
Target:  5'- aGGAacGCGCCGAGGUacaUGACGUGCuCGGg -3'
miRNA:   3'- -CCUccUGUGGCUCCG---GCUGCACG-GCC- -5'
5160 5' -60 NC_001798.1 + 9833 0.75 0.313148
Target:  5'- ----cGCACagguaGAGGCCGGCGUGCUGGg -3'
miRNA:   3'- ccuccUGUGg----CUCCGGCUGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 154041 0.75 0.313148
Target:  5'- gGGAGcGCGCCGGGGCgCGGCacgGCUGGa -3'
miRNA:   3'- -CCUCcUGUGGCUCCG-GCUGca-CGGCC- -5'
5160 5' -60 NC_001798.1 + 6285 0.75 0.320042
Target:  5'- nGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 6311 0.75 0.320042
Target:  5'- nGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 23880 0.75 0.320042
Target:  5'- uGGGGGGCGcCCGAGGCgGAgGagGCgCGGg -3'
miRNA:   3'- -CCUCCUGU-GGCUCCGgCUgCa-CG-GCC- -5'
5160 5' -60 NC_001798.1 + 6259 0.75 0.320042
Target:  5'- gGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 148416 0.75 0.327048
Target:  5'- gGGuGGGCGCCGGGGCgGGgGUGggcaCGGg -3'
miRNA:   3'- -CCuCCUGUGGCUCCGgCUgCACg---GCC- -5'
5160 5' -60 NC_001798.1 + 2606 0.75 0.334168
Target:  5'- cGGGGGGCGCgGGGcGCCGcccgGCGgcgcccugGCCGGg -3'
miRNA:   3'- -CCUCCUGUGgCUC-CGGC----UGCa-------CGGCC- -5'
5160 5' -60 NC_001798.1 + 24645 0.74 0.356202
Target:  5'- cGGAGGGCuuCGAcggcgaccuGGCgGcCGUGCCGGg -3'
miRNA:   3'- -CCUCCUGugGCU---------CCGgCuGCACGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.