miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 56 0.67 0.738203
Target:  5'- gGGGGGGCGCgaAGGCgGGCGgcgGCggCGGg -3'
miRNA:   3'- -CCUCCUGUGgcUCCGgCUGCa--CG--GCC- -5'
5160 5' -60 NC_001798.1 + 1563 0.67 0.726049
Target:  5'- cGGGGACAugggcaccagcgugUCGGGGCCGaagcGCGUGCgcacgCGGu -3'
miRNA:   3'- cCUCCUGU--------------GGCUCCGGC----UGCACG-----GCC- -5'
5160 5' -60 NC_001798.1 + 2273 0.66 0.816701
Target:  5'- cGGGGcGGCGCagcgcgcggccagCGAGGCCaGCGcGCgCGGg -3'
miRNA:   3'- -CCUC-CUGUG-------------GCUCCGGcUGCaCG-GCC- -5'
5160 5' -60 NC_001798.1 + 2414 0.72 0.46285
Target:  5'- cGAGGGCGCCGgcguguggcuGGGCCccGGCG-GCUGGc -3'
miRNA:   3'- cCUCCUGUGGC----------UCCGG--CUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 2606 0.75 0.334168
Target:  5'- cGGGGGGCGCgGGGcGCCGcccgGCGgcgcccugGCCGGg -3'
miRNA:   3'- -CCUCCUGUGgCUC-CGGC----UGCa-------CGGCC- -5'
5160 5' -60 NC_001798.1 + 3007 0.77 0.250384
Target:  5'- --cGGGCGCgGGGGCgCGGCGgGCCGGg -3'
miRNA:   3'- ccuCCUGUGgCUCCG-GCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 3270 0.69 0.62286
Target:  5'- cGGcGGGCACCGcgcgcucgucGGCCGGCGacGCCGc -3'
miRNA:   3'- -CCuCCUGUGGCu---------CCGGCUGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 3790 0.67 0.747457
Target:  5'- -cGGGGCGcCCGAGGCCu-CGaaCCGGg -3'
miRNA:   3'- ccUCCUGU-GGCUCCGGcuGCacGGCC- -5'
5160 5' -60 NC_001798.1 + 3957 0.68 0.70997
Target:  5'- aGAaGGCGCCgGAGGCCGcgucgGCGUccagcucgaccGCCGGg -3'
miRNA:   3'- cCUcCUGUGG-CUCCGGC-----UGCA-----------CGGCC- -5'
5160 5' -60 NC_001798.1 + 4088 0.66 0.792192
Target:  5'- cGGGGGuccGgGCCGGGGCgGgcucggcccuggGCGggcucgGCCGGg -3'
miRNA:   3'- -CCUCC---UgUGGCUCCGgC------------UGCa-----CGGCC- -5'
5160 5' -60 NC_001798.1 + 4298 0.69 0.642354
Target:  5'- aGGAGGAgGCgGAGgacGCCGACGacgaggauCCGGa -3'
miRNA:   3'- -CCUCCUgUGgCUC---CGGCUGCac------GGCC- -5'
5160 5' -60 NC_001798.1 + 4347 0.73 0.419785
Target:  5'- aGAGGcgGCCGAGcGCCGGCGgggggcgcGCCGGc -3'
miRNA:   3'- cCUCCugUGGCUC-CGGCUGCa-------CGGCC- -5'
5160 5' -60 NC_001798.1 + 4408 0.7 0.564733
Target:  5'- cGGcGGGGCGCCGGGGgucgCGGCGacagGCUGGc -3'
miRNA:   3'- -CC-UCCUGUGGCUCCg---GCUGCa---CGGCC- -5'
5160 5' -60 NC_001798.1 + 4745 0.71 0.489773
Target:  5'- --cGGACGCCGGGGCCGcCucGUCGGc -3'
miRNA:   3'- ccuCCUGUGGCUCCGGCuGcaCGGCC- -5'
5160 5' -60 NC_001798.1 + 5275 0.72 0.445339
Target:  5'- aGGAGGACGCgGAGGaggagcgaUCGACGccGCCGc -3'
miRNA:   3'- -CCUCCUGUGgCUCC--------GGCUGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 5925 0.69 0.62286
Target:  5'- cGGGGGGCGggccguuccUCGcgcacauaaaGGGCCGGCGUcCCGGu -3'
miRNA:   3'- -CCUCCUGU---------GGC----------UCCGGCUGCAcGGCC- -5'
5160 5' -60 NC_001798.1 + 5984 0.69 0.613119
Target:  5'- aGGGGACACCGGcuGCgCGGCGgagaCCGGg -3'
miRNA:   3'- cCUCCUGUGGCUc-CG-GCUGCac--GGCC- -5'
5160 5' -60 NC_001798.1 + 6227 0.68 0.700429
Target:  5'- cGGGGGGCcgGCCGGGGg-GACGgGCgGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGgCC- -5'
5160 5' -60 NC_001798.1 + 6259 0.75 0.320042
Target:  5'- gGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 6285 0.75 0.320042
Target:  5'- nGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.