miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 154394 0.67 0.738203
Target:  5'- gGGGGGGCGCgaAGGCgGGCGgcgGCggCGGg -3'
miRNA:   3'- -CCUCCUGUGgcUCCGgCUGCa--CG--GCC- -5'
5160 5' -60 NC_001798.1 + 154131 0.67 0.765682
Target:  5'- cGGGGACcCCGGcggcgggacauGGCgGGCG-GCUGGg -3'
miRNA:   3'- cCUCCUGuGGCU-----------CCGgCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 154087 0.71 0.508121
Target:  5'- cGGcuGGAgCGCCGGGGCgCGGCcggcGCCGGg -3'
miRNA:   3'- -CCu-CCU-GUGGCUCCG-GCUGca--CGGCC- -5'
5160 5' -60 NC_001798.1 + 154041 0.75 0.313148
Target:  5'- gGGAGcGCGCCGGGGCgCGGCacgGCUGGa -3'
miRNA:   3'- -CCUCcUGUGGCUCCG-GCUGca-CGGCC- -5'
5160 5' -60 NC_001798.1 + 153809 0.74 0.379238
Target:  5'- cGGGGGGCaggcgGCgGcAGGCgCGGCGUGCgGGg -3'
miRNA:   3'- -CCUCCUG-----UGgC-UCCG-GCUGCACGgCC- -5'
5160 5' -60 NC_001798.1 + 153771 0.66 0.800777
Target:  5'- aGGGGGCGCUGcGGCCcGCGcuccuUGCgCGGc -3'
miRNA:   3'- cCUCCUGUGGCuCCGGcUGC-----ACG-GCC- -5'
5160 5' -60 NC_001798.1 + 153684 0.74 0.379238
Target:  5'- cGGGGACGCgGGGGCCGcc--GCCGGc -3'
miRNA:   3'- cCUCCUGUGgCUCCGGCugcaCGGCC- -5'
5160 5' -60 NC_001798.1 + 153513 0.66 0.774637
Target:  5'- cGGGGaGACACgGGGGUCGgagggGCGUcaggggGUCGGa -3'
miRNA:   3'- -CCUC-CUGUGgCUCCGGC-----UGCA------CGGCC- -5'
5160 5' -60 NC_001798.1 + 153247 0.66 0.792192
Target:  5'- cGGAGGAC-CCGcGcGCCGcCGccGCCGc -3'
miRNA:   3'- -CCUCCUGuGGCuC-CGGCuGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 153175 0.68 0.670554
Target:  5'- -cGGGGCuccgccgGCCGAGGCCGcCcucGCCGGu -3'
miRNA:   3'- ccUCCUG-------UGGCUCCGGCuGca-CGGCC- -5'
5160 5' -60 NC_001798.1 + 153007 0.67 0.75662
Target:  5'- cGGGGcGGuCGCCGGGGCgGA-GU-CCGGg -3'
miRNA:   3'- -CCUC-CU-GUGGCUCCGgCUgCAcGGCC- -5'
5160 5' -60 NC_001798.1 + 152236 0.68 0.685057
Target:  5'- cGGcGGcCGCuCGGGGCCGgGguccgcccgggagcuCGUGCCGGg -3'
miRNA:   3'- -CCuCCuGUG-GCUCCGGC-U---------------GCACGGCC- -5'
5160 5' -60 NC_001798.1 + 152184 0.69 0.617014
Target:  5'- gGGGGGGC-CUGAGacCCGGgggucgcccucucacCGUGCCGGg -3'
miRNA:   3'- -CCUCCUGuGGCUCc-GGCU---------------GCACGGCC- -5'
5160 5' -60 NC_001798.1 + 150845 0.72 0.47174
Target:  5'- aGGGGGCGCCGgucGGGUCGcgGCGgGCUGGg -3'
miRNA:   3'- cCUCCUGUGGC---UCCGGC--UGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 150620 0.67 0.738203
Target:  5'- uGGGGGGCuCCuGGGCCGcGCGggGCUGu -3'
miRNA:   3'- -CCUCCUGuGGcUCCGGC-UGCa-CGGCc -5'
5160 5' -60 NC_001798.1 + 150545 0.67 0.726049
Target:  5'- aGGAGGAgAcaaaggagagcggcCCGGGGCCcGCGgggcgGCgCGGa -3'
miRNA:   3'- -CCUCCUgU--------------GGCUCCGGcUGCa----CG-GCC- -5'
5160 5' -60 NC_001798.1 + 150441 0.68 0.661819
Target:  5'- cGGAcuccGGACGCgCGGGG-CGACG-GCCGc -3'
miRNA:   3'- -CCU----CCUGUG-GCUCCgGCUGCaCGGCc -5'
5160 5' -60 NC_001798.1 + 150201 0.7 0.545637
Target:  5'- gGGGGcGGCACCGGGGgUGuugGUGCCGcGg -3'
miRNA:   3'- -CCUC-CUGUGGCUCCgGCug-CACGGC-C- -5'
5160 5' -60 NC_001798.1 + 149967 0.68 0.681197
Target:  5'- cGGA-GACGCCGAcgggGGCgCGGCGcccgcggacGCCGGg -3'
miRNA:   3'- -CCUcCUGUGGCU----CCG-GCUGCa--------CGGCC- -5'
5160 5' -60 NC_001798.1 + 149641 0.67 0.728865
Target:  5'- gGGcAGGuaGCGCgUGAGGCCGG-GcGCCGGg -3'
miRNA:   3'- -CC-UCC--UGUG-GCUCCGGCUgCaCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.