miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5160 5' -60 NC_001798.1 + 6311 0.75 0.320042
Target:  5'- nGGGGGACggGCCGGGGg-GACGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCggCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 6363 0.79 0.180343
Target:  5'- gGGGGGACggGCCGggGGGCCGGgGgGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGC--UCCGGCUgCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 6536 0.71 0.49891
Target:  5'- gGGGGGACggGCCGGGGggaCGGgGggacggGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCg--GCUgCa-----CGGCC- -5'
5160 5' -60 NC_001798.1 + 6578 0.71 0.49891
Target:  5'- gGGGGGACggGCCGGGGggaCGGgGggacggGCCGGg -3'
miRNA:   3'- -CCUCCUG--UGGCUCCg--GCUgCa-----CGGCC- -5'
5160 5' -60 NC_001798.1 + 8833 0.72 0.436724
Target:  5'- uGGAacGCACCGAgucuuGGUCGGCGgGCCGGg -3'
miRNA:   3'- -CCUccUGUGGCU-----CCGGCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 9671 0.69 0.632607
Target:  5'- cGGAGGGCGCgggauggGGGGCUcucACGUGCgGGc -3'
miRNA:   3'- -CCUCCUGUGg------CUCCGGc--UGCACGgCC- -5'
5160 5' -60 NC_001798.1 + 9833 0.75 0.313148
Target:  5'- ----cGCACagguaGAGGCCGGCGUGCUGGg -3'
miRNA:   3'- ccuccUGUGg----CUCCGGCUGCACGGCC- -5'
5160 5' -60 NC_001798.1 + 11178 0.7 0.555161
Target:  5'- uGGGGGCGgUGGGGCgGGCcUGCCGa -3'
miRNA:   3'- cCUCCUGUgGCUCCGgCUGcACGGCc -5'
5160 5' -60 NC_001798.1 + 11230 0.66 0.809224
Target:  5'- gGGGGGccgucgggccACugCGGGGCCGAgGacUGaCGGa -3'
miRNA:   3'- -CCUCC----------UGugGCUCCGGCUgC--ACgGCC- -5'
5160 5' -60 NC_001798.1 + 12711 0.7 0.545637
Target:  5'- uGGGGGCGgCGGGGgCGugGUGCgGc -3'
miRNA:   3'- cCUCCUGUgGCUCCgGCugCACGgCc -5'
5160 5' -60 NC_001798.1 + 15190 0.73 0.428205
Target:  5'- gGGGGGugGg-GGGGCUGGCGaGCCGGg -3'
miRNA:   3'- -CCUCCugUggCUCCGGCUGCaCGGCC- -5'
5160 5' -60 NC_001798.1 + 16155 0.73 0.411467
Target:  5'- cGGGGGCACCGAGcGCCacgGGCGgcccGCgGGg -3'
miRNA:   3'- cCUCCUGUGGCUC-CGG---CUGCa---CGgCC- -5'
5160 5' -60 NC_001798.1 + 16192 0.69 0.613119
Target:  5'- gGGGGGACGCaCG-GGCCGcccuccgcACGcGCCGc -3'
miRNA:   3'- -CCUCCUGUG-GCuCCGGC--------UGCaCGGCc -5'
5160 5' -60 NC_001798.1 + 16231 0.68 0.70997
Target:  5'- gGGGGGGCGgUGGGGCCGGg--GCCc- -3'
miRNA:   3'- -CCUCCUGUgGCUCCGGCUgcaCGGcc -5'
5160 5' -60 NC_001798.1 + 16477 0.67 0.728865
Target:  5'- aGGAGGAUggGCUGAcGGCaGGCGcgggugaGCCGGu -3'
miRNA:   3'- -CCUCCUG--UGGCU-CCGgCUGCa------CGGCC- -5'
5160 5' -60 NC_001798.1 + 16772 0.67 0.738203
Target:  5'- cGGGGACAcCCGAcccGCCG-CGUGuccCCGGa -3'
miRNA:   3'- cCUCCUGU-GGCUc--CGGCuGCAC---GGCC- -5'
5160 5' -60 NC_001798.1 + 17983 0.66 0.783476
Target:  5'- gGGGGGGCugCGcGGCCcggaacaggagGAUGgccGCUGGc -3'
miRNA:   3'- -CCUCCUGugGCuCCGG-----------CUGCa--CGGCC- -5'
5160 5' -60 NC_001798.1 + 22117 0.68 0.690835
Target:  5'- cGGGGcGACcucGCCGgccccuuugGGGCCGGCGgggGCCa- -3'
miRNA:   3'- -CCUC-CUG---UGGC---------UCCGGCUGCa--CGGcc -5'
5160 5' -60 NC_001798.1 + 22776 0.66 0.792192
Target:  5'- cGGGGGACGucuCCG-GGCCGcgGCGgagacGaCCGGc -3'
miRNA:   3'- -CCUCCUGU---GGCuCCGGC--UGCa----C-GGCC- -5'
5160 5' -60 NC_001798.1 + 22910 0.76 0.293146
Target:  5'- cGGAGGAgAacgaagaCGAGGCCGACGacGCCGc -3'
miRNA:   3'- -CCUCCUgUg------GCUCCGGCUGCa-CGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.