miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 3' -52.6 NC_001798.1 + 136872 0.66 0.984654
Target:  5'- cAGCG-AGGGCGUG-GCGuGgcucCGGGGa -3'
miRNA:   3'- cUUGCuUCCCGCACaCGU-Caa--GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 85821 0.66 0.980692
Target:  5'- uGACGGgggGGGGCGgggGCGGg-CGGGGg -3'
miRNA:   3'- cUUGCU---UCCCGCacaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 16228 0.66 0.980692
Target:  5'- uGugGggGGGCG-GUGgGGc-CGGGGc -3'
miRNA:   3'- cUugCuuCCCGCaCACgUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 12927 0.66 0.980037
Target:  5'- cGGCGAuuuuuaagcuguauAGGGCGacgGUGCgcuGGUuuUCGGGGa -3'
miRNA:   3'- cUUGCU--------------UCCCGCa--CACG---UCA--AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 51012 0.66 0.978446
Target:  5'- aGGACGAgcccgAGGGCG-GUGgAGU-CGGGu -3'
miRNA:   3'- -CUUGCU-----UCCCGCaCACgUCAaGCUCc -5'
5161 3' -52.6 NC_001798.1 + 34684 0.66 0.978446
Target:  5'- aGAGgGAAgGGGCGcG-GCGGgaCGGGGg -3'
miRNA:   3'- -CUUgCUU-CCCGCaCaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 31146 0.66 0.978446
Target:  5'- cGGCGcGGGGGCGgcgGUGCGGgggCGAc- -3'
miRNA:   3'- cUUGC-UUCCCGCa--CACGUCaa-GCUcc -5'
5161 3' -52.6 NC_001798.1 + 2538 0.66 0.978446
Target:  5'- gGGGCGggGGGCGcGgcccccGCGGga-GGGGc -3'
miRNA:   3'- -CUUGCuuCCCGCaCa-----CGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 146040 0.66 0.976012
Target:  5'- --gUGggGGGCGUgGUGguGaaCGAuGGg -3'
miRNA:   3'- cuuGCuuCCCGCA-CACguCaaGCU-CC- -5'
5161 3' -52.6 NC_001798.1 + 23893 0.66 0.980692
Target:  5'- aGGCGGAGgaGGCGcGgGCccGGUUCGAGGc -3'
miRNA:   3'- cUUGCUUC--CCGCaCaCG--UCAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 144557 0.66 0.980692
Target:  5'- cGugGggGGGCGUucgaaAGggCGAGGa -3'
miRNA:   3'- cUugCuuCCCGCAcacg-UCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 36514 0.66 0.982759
Target:  5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3'
miRNA:   3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 108850 0.66 0.984654
Target:  5'- uGGACGAcGGGCGggcugGC-GUUCGGGu -3'
miRNA:   3'- -CUUGCUuCCCGCaca--CGuCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 27158 0.66 0.984654
Target:  5'- gGAGgGAGGGGC-UGcUGCgAGcUCGGGGc -3'
miRNA:   3'- -CUUgCUUCCCGcAC-ACG-UCaAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 15480 0.66 0.984654
Target:  5'- uGGGCGggGGGguCGUGgggGCuGGUguggUGGGGg -3'
miRNA:   3'- -CUUGCuuCCC--GCACa--CG-UCAa---GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 154301 0.66 0.984654
Target:  5'- -uGCGGgcccucuuaaGGGGCGgcgGCAGgaCGGGGa -3'
miRNA:   3'- cuUGCU----------UCCCGCacaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 100715 0.66 0.984654
Target:  5'- --uCGcGGGGC-UGUGCGcGUucuUCGAGGg -3'
miRNA:   3'- cuuGCuUCCCGcACACGU-CA---AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 69490 0.66 0.983916
Target:  5'- cGAGCGAuGGGCGgGcGCAGgacgcgccggagCGGGGc -3'
miRNA:   3'- -CUUGCUuCCCGCaCaCGUCaa----------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 36598 0.66 0.982759
Target:  5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3'
miRNA:   3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 36556 0.66 0.982759
Target:  5'- cGGGCGggGGcGCGcGgcgGCcGggCGGGGg -3'
miRNA:   3'- -CUUGCuuCC-CGCaCa--CGuCaaGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.