miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 3' -52.6 NC_001798.1 + 114329 1.1 0.005572
Target:  5'- uGAACGAAGGGCGUGUGCAGUUCGAGGu -3'
miRNA:   3'- -CUUGCUUCCCGCACACGUCAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 57522 0.81 0.36071
Target:  5'- ---gGggGGGCGUggGUGUGGUUCGGGGg -3'
miRNA:   3'- cuugCuuCCCGCA--CACGUCAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 101865 0.76 0.616064
Target:  5'- cGGCGGAgggggguGGGCGUGUGCGGgg-GAGGg -3'
miRNA:   3'- cUUGCUU-------CCCGCACACGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 149398 0.75 0.648302
Target:  5'- -cGCGggGGGCGUcggGUAG-UCGGGGg -3'
miRNA:   3'- cuUGCuuCCCGCAca-CGUCaAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 30948 0.74 0.67938
Target:  5'- cGGGCGggGGGCGg--GCGGgggucgggCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCacaCGUCaa------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 2576 0.74 0.699913
Target:  5'- gGGGCGggGGGCGUccGcGCGGcucuucUUCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCA--CaCGUC------AAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 50574 0.73 0.740195
Target:  5'- gGggUGggGGGUGUGUGCcGUUgGGuuGGg -3'
miRNA:   3'- -CuuGCuuCCCGCACACGuCAAgCU--CC- -5'
5161 3' -52.6 NC_001798.1 + 83644 0.73 0.759791
Target:  5'- gGAGCGGAGGGgaUGUGCGGcUCGcGGg -3'
miRNA:   3'- -CUUGCUUCCCgcACACGUCaAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 112828 0.73 0.77892
Target:  5'- uGGGCGucAGGGCGUG-GguGUgaauuUCGGGGg -3'
miRNA:   3'- -CUUGCu-UCCCGCACaCguCA-----AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 150088 0.72 0.788285
Target:  5'- gGGGCGAGGGGCGaGcGCGGggCGGcGGa -3'
miRNA:   3'- -CUUGCUUCCCGCaCaCGUCaaGCU-CC- -5'
5161 3' -52.6 NC_001798.1 + 12713 0.72 0.824205
Target:  5'- gGGGCGGcgGGGGCGUgGUGCGGcgCGAc- -3'
miRNA:   3'- -CUUGCU--UCCCGCA-CACGUCaaGCUcc -5'
5161 3' -52.6 NC_001798.1 + 23546 0.71 0.841116
Target:  5'- cGACGAGGaGGCGgggGUGCccg-CGAGGg -3'
miRNA:   3'- cUUGCUUC-CCGCa--CACGucaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 15345 0.71 0.857244
Target:  5'- uAGCGggGGGCGag-GCGGUgaGGGGg -3'
miRNA:   3'- cUUGCuuCCCGCacaCGUCAagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 51325 0.7 0.886928
Target:  5'- cGACGuuuuGGGGCGgguggGCGGUUCGcGGg -3'
miRNA:   3'- cUUGCu---UCCCGCaca--CGUCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 66543 0.7 0.900396
Target:  5'- aGGCGggGGGCGc-UGCcgaaGGUUCGuGGg -3'
miRNA:   3'- cUUGCuuCCCGCacACG----UCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 148382 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 148275 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97250 0.69 0.918793
Target:  5'- cGGGCGgcGGGCGga-GCAcuucgaucgcgcGUUCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCacaCGU------------CAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 48530 0.69 0.918793
Target:  5'- uGGCGAGGGGCGggagGgGCGGga-GGGGc -3'
miRNA:   3'- cUUGCUUCCCGCa---CaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 66438 0.69 0.924435
Target:  5'- aGAUGAuAGGGCGUGUauGC-GUUgGGGGg -3'
miRNA:   3'- cUUGCU-UCCCGCACA--CGuCAAgCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.