miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 3' -52.6 NC_001798.1 + 35386 0.67 0.971709
Target:  5'- aAugGAAGGGCGUGgggccggccgccggaUGCccg-CGGGGg -3'
miRNA:   3'- cUugCUUCCCGCAC---------------ACGucaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 100978 0.67 0.970551
Target:  5'- --cCGAccccgGGGGCGUGgGCGGggaGGGGg -3'
miRNA:   3'- cuuGCU-----UCCCGCACaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 138501 0.67 0.96751
Target:  5'- --cCGGAGGGCGUG-GCAcgcgacgaucUCGGGGc -3'
miRNA:   3'- cuuGCUUCCCGCACaCGUca--------AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 33486 0.67 0.96751
Target:  5'- aGAGaGggGGGaaaGUGggGCGGgggCGAGGg -3'
miRNA:   3'- -CUUgCuuCCCg--CACa-CGUCaa-GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97531 0.68 0.957067
Target:  5'- aGGAgGggGGGCGgagGcGUGGcgCGGGGa -3'
miRNA:   3'- -CUUgCuuCCCGCa--CaCGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 56189 0.68 0.944538
Target:  5'- gGggUGggGuGGgGUGUGguGgguaCGGGGg -3'
miRNA:   3'- -CuuGCuuC-CCgCACACguCaa--GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 31340 0.69 0.929831
Target:  5'- cGGCGggGGGCGcGcGCAGgcgCGGcGGg -3'
miRNA:   3'- cUUGCuuCCCGCaCaCGUCaa-GCU-CC- -5'
5161 3' -52.6 NC_001798.1 + 98870 0.69 0.924435
Target:  5'- --cCGAcGGGCGccacggugGUGCAGUUUGAGc -3'
miRNA:   3'- cuuGCUuCCCGCa-------CACGUCAAGCUCc -5'
5161 3' -52.6 NC_001798.1 + 66438 0.69 0.924435
Target:  5'- aGAUGAuAGGGCGUGUauGC-GUUgGGGGg -3'
miRNA:   3'- cUUGCU-UCCCGCACA--CGuCAAgCUCC- -5'
5161 3' -52.6 NC_001798.1 + 36419 0.69 0.924435
Target:  5'- cGGGCGggGcGGUGgg-GCGGggUCGGGGu -3'
miRNA:   3'- -CUUGCuuC-CCGCacaCGUCa-AGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 4260 0.69 0.924435
Target:  5'- aGACGAGGaGGCGgaUGCAGa-CGAGGa -3'
miRNA:   3'- cUUGCUUC-CCGCacACGUCaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 48530 0.69 0.918793
Target:  5'- uGGCGAGGGGCGggagGgGCGGga-GGGGc -3'
miRNA:   3'- cUUGCUUCCCGCa---CaCGUCaagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 97250 0.69 0.918793
Target:  5'- cGGGCGgcGGGCGga-GCAcuucgaucgcgcGUUCGGGGg -3'
miRNA:   3'- -CUUGCuuCCCGCacaCGU------------CAAGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 148382 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 148275 0.69 0.912905
Target:  5'- gGAGgGgcGGGCGUGgcggGCAGgugugcgggCGGGGu -3'
miRNA:   3'- -CUUgCuuCCCGCACa---CGUCaa-------GCUCC- -5'
5161 3' -52.6 NC_001798.1 + 66543 0.7 0.900396
Target:  5'- aGGCGggGGGCGc-UGCcgaaGGUUCGuGGg -3'
miRNA:   3'- cUUGCuuCCCGCacACG----UCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 51325 0.7 0.886928
Target:  5'- cGACGuuuuGGGGCGgguggGCGGUUCGcGGg -3'
miRNA:   3'- cUUGCu---UCCCGCaca--CGUCAAGCuCC- -5'
5161 3' -52.6 NC_001798.1 + 15345 0.71 0.857244
Target:  5'- uAGCGggGGGCGag-GCGGUgaGGGGg -3'
miRNA:   3'- cUUGCuuCCCGCacaCGUCAagCUCC- -5'
5161 3' -52.6 NC_001798.1 + 23546 0.71 0.841116
Target:  5'- cGACGAGGaGGCGgggGUGCccg-CGAGGg -3'
miRNA:   3'- cUUGCUUC-CCGCa--CACGucaaGCUCC- -5'
5161 3' -52.6 NC_001798.1 + 12713 0.72 0.824205
Target:  5'- gGGGCGGcgGGGGCGUgGUGCGGcgCGAc- -3'
miRNA:   3'- -CUUGCU--UCCCGCA-CACGUCaaGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.