miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 83343 0.66 0.656872
Target:  5'- -cCAuUCGgCCGCGGCGucGCCCGCGaaCa -3'
miRNA:   3'- gaGU-AGCgGGCGCUGC--CGGGCGUggG- -5'
5161 5' -62.4 NC_001798.1 + 86733 0.66 0.656872
Target:  5'- -aCAuUUGUCCGCGA-GGCCgGCGCgCu -3'
miRNA:   3'- gaGU-AGCGGGCGCUgCCGGgCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 118995 0.66 0.656872
Target:  5'- ---cUgGCCCGCGagauagucgcGCGGCUgGuCGCCCg -3'
miRNA:   3'- gaguAgCGGGCGC----------UGCCGGgC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 143810 0.66 0.656872
Target:  5'- -cCAg-GCCCG-GGCGGCgCGCGgCCa -3'
miRNA:   3'- gaGUagCGGGCgCUGCCGgGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 146980 0.66 0.65397
Target:  5'- uUCcgCGCCUcCGAgGGUCCGCcucuugccucggggACCCc -3'
miRNA:   3'- gAGuaGCGGGcGCUgCCGGGCG--------------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 19133 0.66 0.652034
Target:  5'- uUCAUCGCCacgaagaccaacgaCGCGugGGUgggggaaCCGUggccccuGCCCg -3'
miRNA:   3'- gAGUAGCGG--------------GCGCugCCG-------GGCG-------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 131338 0.66 0.647191
Target:  5'- -cCcgCGCCCcgggcGCGAC-GUCgGCGCCCg -3'
miRNA:   3'- gaGuaGCGGG-----CGCUGcCGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 105751 0.66 0.647191
Target:  5'- --uGUCGCCgGCGACaaaugagucCCCGCgcGCCCg -3'
miRNA:   3'- gagUAGCGGgCGCUGcc-------GGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 133753 0.66 0.647191
Target:  5'- -gCG-CGCCCGCGugGGggCGCugCUu -3'
miRNA:   3'- gaGUaGCGGGCGCugCCggGCGugGG- -5'
5161 5' -62.4 NC_001798.1 + 366 0.66 0.647191
Target:  5'- ----cCGCCCGCacACGGuucCCCGcCACCCc -3'
miRNA:   3'- gaguaGCGGGCGc-UGCC---GGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 28729 0.66 0.647191
Target:  5'- gCUCGg-GCCCGagccCGaGCCCGgGCCCa -3'
miRNA:   3'- -GAGUagCGGGCgcu-GC-CGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 38885 0.66 0.647191
Target:  5'- gUCGUCcaGCCCGCacaGGCCuCGgGCCUu -3'
miRNA:   3'- gAGUAG--CGGGCGcugCCGG-GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 134423 0.66 0.647191
Target:  5'- -aCGUCGaCCCGCuGGCccuGUCCGCGCgCg -3'
miRNA:   3'- gaGUAGC-GGGCG-CUGc--CGGGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 147736 0.66 0.647191
Target:  5'- -gCAcCGCCCGCGAgccaaCCCGUAUCCu -3'
miRNA:   3'- gaGUaGCGGGCGCUgcc--GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 4711 0.66 0.647191
Target:  5'- -aCGcCGUCCGCGGCaGGCUCGUcgacgGCCUc -3'
miRNA:   3'- gaGUaGCGGGCGCUG-CCGGGCG-----UGGG- -5'
5161 5' -62.4 NC_001798.1 + 31564 0.66 0.647191
Target:  5'- --aGUCGUCgG-GGCGcGCCgCGCGCCCc -3'
miRNA:   3'- gagUAGCGGgCgCUGC-CGG-GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 80171 0.66 0.647191
Target:  5'- uUCGUccagCGCCUGaccccgcauccCGAC-GCCCGCAUCCg -3'
miRNA:   3'- gAGUA----GCGGGC-----------GCUGcCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 93743 0.66 0.647191
Target:  5'- -aCGaCGCUgaUGCGGCugcgGGCCCGcCACCCc -3'
miRNA:   3'- gaGUaGCGG--GCGCUG----CCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 31959 0.66 0.644284
Target:  5'- gCUCGccccUCGCCCcccaggggguggggGCcaagagGGCGGCgCCGCGCCg -3'
miRNA:   3'- -GAGU----AGCGGG--------------CG------CUGCCG-GGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 54644 0.66 0.637499
Target:  5'- -cCcgCGCCCcccgaGCaGCGGCCgGCAgCCg -3'
miRNA:   3'- gaGuaGCGGG-----CGcUGCCGGgCGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.