miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 86466 0.66 0.676174
Target:  5'- uUCGUgaGCCUGCuuCGGgCCGCggGCCCc -3'
miRNA:   3'- gAGUAg-CGGGCGcuGCCgGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 104748 0.66 0.676174
Target:  5'- uCUCGUCGCCgauuacCG-CGGCCagaCGCGCCa -3'
miRNA:   3'- -GAGUAGCGGgc----GCuGCCGG---GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 68201 0.66 0.676174
Target:  5'- -cCGUCGUCaauagacgaucaCGCG-CaGGCCCGcCACCCc -3'
miRNA:   3'- gaGUAGCGG------------GCGCuG-CCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 28976 0.66 0.675211
Target:  5'- gCUC--CGCCCGCcccagggGGCGGCgccggccaaCCGCGCgCCg -3'
miRNA:   3'- -GAGuaGCGGGCG-------CUGCCG---------GGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 35590 0.66 0.675211
Target:  5'- gCUCGgcugCGgCCGCGggcuccgGgGGCuCCGCACUCu -3'
miRNA:   3'- -GAGUa---GCgGGCGC-------UgCCG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 16167 0.66 0.666536
Target:  5'- ----gCGCCaCG-GGCGGCCCGCGgggaCCg -3'
miRNA:   3'- gaguaGCGG-GCgCUGCCGGGCGUg---GG- -5'
5161 5' -62.4 NC_001798.1 + 123849 0.66 0.666536
Target:  5'- -----aGCUCGCgGACGaGCCCGUGgCCCa -3'
miRNA:   3'- gaguagCGGGCG-CUGC-CGGGCGU-GGG- -5'
5161 5' -62.4 NC_001798.1 + 138742 0.66 0.666536
Target:  5'- gCUCcgCgGCCCcgGCGACcguGGCCaGCugCCg -3'
miRNA:   3'- -GAGuaG-CGGG--CGCUG---CCGGgCGugGG- -5'
5161 5' -62.4 NC_001798.1 + 52975 0.66 0.666536
Target:  5'- -----gGCgCGCGaccgggcuggGCGGCCCGCcacGCCCa -3'
miRNA:   3'- gaguagCGgGCGC----------UGCCGGGCG---UGGG- -5'
5161 5' -62.4 NC_001798.1 + 134635 0.66 0.666536
Target:  5'- gUCGagGUgUGCGAgguCGGCCUGCgGCCCc -3'
miRNA:   3'- gAGUagCGgGCGCU---GCCGGGCG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 138701 0.66 0.666536
Target:  5'- --aGUCGaaCGCGACGGCCagaucagaaGC-CCCg -3'
miRNA:   3'- gagUAGCggGCGCUGCCGGg--------CGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 78753 0.66 0.666536
Target:  5'- gCUCGacgUGCCCGCGGuuaucUGGCUagaGCacGCCCa -3'
miRNA:   3'- -GAGUa--GCGGGCGCU-----GCCGGg--CG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 153283 0.66 0.66557
Target:  5'- cCUCcgCggGUCCGCcgucuucGugGGCCCGgGCUCg -3'
miRNA:   3'- -GAGuaG--CGGGCG-------CugCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 152395 0.66 0.66074
Target:  5'- -cCGUCGCUCGCaGugccggggugcgaauGCGGCCCG-ACCg -3'
miRNA:   3'- gaGUAGCGGGCG-C---------------UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 72962 0.66 0.65784
Target:  5'- aUCAgCGCaCCGCagccauucaggagguGAUGGCCCacgcgaccgaggacGCGCCCc -3'
miRNA:   3'- gAGUaGCG-GGCG---------------CUGCCGGG--------------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 75337 0.66 0.656872
Target:  5'- aUCAaCGCCCu--GCGGUcgCCGUACCCg -3'
miRNA:   3'- gAGUaGCGGGcgcUGCCG--GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 83343 0.66 0.656872
Target:  5'- -cCAuUCGgCCGCGGCGucGCCCGCGaaCa -3'
miRNA:   3'- gaGU-AGCgGGCGCUGC--CGGGCGUggG- -5'
5161 5' -62.4 NC_001798.1 + 86733 0.66 0.656872
Target:  5'- -aCAuUUGUCCGCGA-GGCCgGCGCgCu -3'
miRNA:   3'- gaGU-AGCGGGCGCUgCCGGgCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 118995 0.66 0.656872
Target:  5'- ---cUgGCCCGCGagauagucgcGCGGCUgGuCGCCCg -3'
miRNA:   3'- gaguAgCGGGCGC----------UGCCGGgC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 33630 0.66 0.656872
Target:  5'- ----cCGCCC-CGGCGcccaccccGCCCGCACaCCu -3'
miRNA:   3'- gaguaGCGGGcGCUGC--------CGGGCGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.