miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 3789 0.7 0.416704
Target:  5'- -cCGgggCGCCCGaGGCcucgaaccgGGCCCGCGCCUc -3'
miRNA:   3'- gaGUa--GCGGGCgCUG---------CCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 4080 0.67 0.569915
Target:  5'- --gGUCG-CCGCGGgGGUCCGgGCCg -3'
miRNA:   3'- gagUAGCgGGCGCUgCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 4172 0.76 0.175398
Target:  5'- cCUCGUCGUCCGCgccGAgGGUCC-CGCCCg -3'
miRNA:   3'- -GAGUAGCGGGCG---CUgCCGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 4477 0.69 0.477055
Target:  5'- gUCGUCuccgGUCCGCGgacccaGCGGCCCGCGUCg -3'
miRNA:   3'- gAGUAG----CGGGCGC------UGCCGGGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 4711 0.66 0.647191
Target:  5'- -aCGcCGUCCGCGGCaGGCUCGUcgacgGCCUc -3'
miRNA:   3'- gaGUaGCGGGCGCUG-CCGGGCG-----UGGG- -5'
5161 5' -62.4 NC_001798.1 + 4918 0.66 0.63653
Target:  5'- gUCGUC-UCCGCcGCGGCCCGgAgacguccCCCg -3'
miRNA:   3'- gAGUAGcGGGCGcUGCCGGGCgU-------GGG- -5'
5161 5' -62.4 NC_001798.1 + 4952 0.72 0.311145
Target:  5'- cCUCGUcCGCCauCGCGAccuCGGCCCcGCgGCCCu -3'
miRNA:   3'- -GAGUA-GCGG--GCGCU---GCCGGG-CG-UGGG- -5'
5161 5' -62.4 NC_001798.1 + 5381 0.72 0.324903
Target:  5'- gUCcgCGUCCGUGGCGGCggcccguuggUCGCGCCg -3'
miRNA:   3'- gAGuaGCGGGCGCUGCCG----------GGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 5422 0.7 0.400333
Target:  5'- gCUC--CGCCCGCG-CGGCaucucauuaGCGCCCg -3'
miRNA:   3'- -GAGuaGCGGGCGCuGCCGgg-------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 5606 0.7 0.400333
Target:  5'- -cCGUUgGUCCGCgGGCGGCuCCGC-CCCa -3'
miRNA:   3'- gaGUAG-CGGGCG-CUGCCG-GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 6058 0.67 0.618111
Target:  5'- ----aCGCCgGCGGCgagcggGGCaccgaCGCACCCg -3'
miRNA:   3'- gaguaGCGGgCGCUG------CCGg----GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 9146 0.66 0.627804
Target:  5'- -gCA-CGCgggCGCGGCGccGCCCGCGCCg -3'
miRNA:   3'- gaGUaGCGg--GCGCUGC--CGGGCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 10576 0.7 0.433477
Target:  5'- cCUCGUCGCCCGCGgggaACGGgggaCUGUAUgCu -3'
miRNA:   3'- -GAGUAGCGGGCGC----UGCCg---GGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 14804 0.69 0.504218
Target:  5'- -gUAUCGCCUGCGccccgccCGGCC-GCGCCa -3'
miRNA:   3'- gaGUAGCGGGCGCu------GCCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 15124 0.66 0.656872
Target:  5'- gUCGUCGUCCuCGGgGGguucgccgucCCCGgCGCCCu -3'
miRNA:   3'- gAGUAGCGGGcGCUgCC----------GGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 16167 0.66 0.666536
Target:  5'- ----gCGCCaCG-GGCGGCCCGCGgggaCCg -3'
miRNA:   3'- gaguaGCGG-GCgCUGCCGGGCGUg---GG- -5'
5161 5' -62.4 NC_001798.1 + 19133 0.66 0.652034
Target:  5'- uUCAUCGCCacgaagaccaacgaCGCGugGGUgggggaaCCGUggccccuGCCCg -3'
miRNA:   3'- gAGUAGCGG--------------GCGCugCCG-------GGCG-------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 19372 0.67 0.618111
Target:  5'- aUCAUccCGCCCGCauccGGCGaCCCaccccacgcaGCGCCCg -3'
miRNA:   3'- gAGUA--GCGGGCG----CUGCcGGG----------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 20680 0.7 0.433477
Target:  5'- aUCAUCGUCgucCGACGGcCCCGUuCCCu -3'
miRNA:   3'- gAGUAGCGGgc-GCUGCC-GGGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 21769 0.67 0.598761
Target:  5'- cCUUuaUGUgCGCGAggaaCGGCCCGCcCCCc -3'
miRNA:   3'- -GAGuaGCGgGCGCU----GCCGGGCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.