miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 23076 0.74 0.243399
Target:  5'- -cCGUCGCCCcccccggagcGCGACGGCgCGCaagaagaagcgGCCCg -3'
miRNA:   3'- gaGUAGCGGG----------CGCUGCCGgGCG-----------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 77277 0.74 0.243399
Target:  5'- ----cCGCCCGCGAccCGGCCuCGC-CCCu -3'
miRNA:   3'- gaguaGCGGGCGCU--GCCGG-GCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 85307 0.74 0.249014
Target:  5'- ----cCGCCCGCGGCccGCCCGCAgacCCCa -3'
miRNA:   3'- gaguaGCGGGCGCUGc-CGGGCGU---GGG- -5'
5161 5' -62.4 NC_001798.1 + 35466 0.74 0.249014
Target:  5'- -cCGUCugcugGCCCGCGGCccgucugcuGGCCCGCGgCCa -3'
miRNA:   3'- gaGUAG-----CGGGCGCUG---------CCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 86819 0.74 0.25822
Target:  5'- -aCAUCGCCCcCGucgcuccggcuccCGGCCCGgGCCCg -3'
miRNA:   3'- gaGUAGCGGGcGCu------------GCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 149986 0.74 0.259977
Target:  5'- -gCggCGCCCGCGgacgccggggcgaGCGGCCCGUggccgcggucGCCCg -3'
miRNA:   3'- gaGuaGCGGGCGC-------------UGCCGGGCG----------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 28590 0.74 0.260564
Target:  5'- uCUgGUgGCCUGggaGACGGCCgCGCGCCUg -3'
miRNA:   3'- -GAgUAgCGGGCg--CUGCCGG-GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 107434 0.74 0.260564
Target:  5'- --gGUCG-CCGCGGCGacCCCGCGCCCc -3'
miRNA:   3'- gagUAGCgGGCGCUGCc-GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 76569 0.74 0.260564
Target:  5'- uUCGUC-CCgGCGAcCGGCCCcGCGCCg -3'
miRNA:   3'- gAGUAGcGGgCGCU-GCCGGG-CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 61888 0.74 0.260564
Target:  5'- cCUCGggcgCGCCCuCGAagcCGGCCCuGCGCCUg -3'
miRNA:   3'- -GAGUa---GCGGGcGCU---GCCGGG-CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 88655 0.74 0.266502
Target:  5'- uCUUGUCGCCCaUGGCcaccaGGCCCGCGgCCg -3'
miRNA:   3'- -GAGUAGCGGGcGCUG-----CCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 134168 0.73 0.272548
Target:  5'- -cCGUCGCggccgcccgcgCCGCGACGGCCC-CGgCCg -3'
miRNA:   3'- gaGUAGCG-----------GGCGCUGCCGGGcGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 144157 0.73 0.278704
Target:  5'- -aCAUCcuCCCGCGGCGGCa-GCACCUc -3'
miRNA:   3'- gaGUAGc-GGGCGCUGCCGggCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 59240 0.73 0.278704
Target:  5'- --uGUC-CCCGCGACacauCCCGCACCCg -3'
miRNA:   3'- gagUAGcGGGCGCUGcc--GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 75165 0.73 0.283079
Target:  5'- gUCGUCGCCguccgugcucgagaCGCuGGgGGCCCGcCGCCCc -3'
miRNA:   3'- gAGUAGCGG--------------GCG-CUgCCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 153235 0.73 0.284338
Target:  5'- -----gGCCCGCGGCGGCggaggacCCGCGCgCCg -3'
miRNA:   3'- gaguagCGGGCGCUGCCG-------GGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 147201 0.73 0.28497
Target:  5'- ----cCGCCCgGCGGucCGGCCCGgGCCCc -3'
miRNA:   3'- gaguaGCGGG-CGCU--GCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 80925 0.73 0.297835
Target:  5'- gCUCAUCGCCgagcgcccucuCGcCGACGGgccCCCGUGCCUg -3'
miRNA:   3'- -GAGUAGCGG-----------GC-GCUGCC---GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 74591 0.73 0.304434
Target:  5'- gUCGUC-CCCGCG-CucCCCGCGCCCa -3'
miRNA:   3'- gAGUAGcGGGCGCuGccGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 4952 0.72 0.311145
Target:  5'- cCUCGUcCGCCauCGCGAccuCGGCCCcGCgGCCCu -3'
miRNA:   3'- -GAGUA-GCGG--GCGCU---GCCGGG-CG-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.