miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 114366 1.1 0.000802
Target:  5'- cCUCAUCGCCCGCGACGGCCCGCACCCc -3'
miRNA:   3'- -GAGUAGCGGGCGCUGCCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 95113 0.81 0.09032
Target:  5'- -----gGCCCGUGAUGGCCgCGCGCCCg -3'
miRNA:   3'- gaguagCGGGCGCUGCCGG-GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 145021 0.8 0.102369
Target:  5'- -aCAUCGUCCGCGGgGGUCCGCAUgCa -3'
miRNA:   3'- gaGUAGCGGGCGCUgCCGGGCGUGgG- -5'
5161 5' -62.4 NC_001798.1 + 79430 0.8 0.102369
Target:  5'- uCUUcgCGCCCuCGAC-GCCCGCGCCCg -3'
miRNA:   3'- -GAGuaGCGGGcGCUGcCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 1211 0.79 0.124838
Target:  5'- -cCGUC-CCCGCG-CGGCCCGCGgCCg -3'
miRNA:   3'- gaGUAGcGGGCGCuGCCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 42725 0.78 0.137717
Target:  5'- gUCGUCGCCaccgGcCGAgGGCCCGuCGCCCg -3'
miRNA:   3'- gAGUAGCGGg---C-GCUgCCGGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 113627 0.78 0.141122
Target:  5'- --aAUCGCCUGCG-CGGCCgGCGCCg -3'
miRNA:   3'- gagUAGCGGGCGCuGCCGGgCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 1310 0.77 0.168805
Target:  5'- gCUCGagcagCGCCCGCGcgcagaacucccgccGCGGCCCGCGCa- -3'
miRNA:   3'- -GAGUa----GCGGGCGC---------------UGCCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 1495 0.77 0.171251
Target:  5'- -gCGUCGCCCGCGcccgaggcgGCGGCCCG-GCCg -3'
miRNA:   3'- gaGUAGCGGGCGC---------UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 4172 0.76 0.175398
Target:  5'- cCUCGUCGUCCGCgccGAgGGUCC-CGCCCg -3'
miRNA:   3'- -GAGUAGCGGGCG---CUgCCGGGcGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 96817 0.76 0.179634
Target:  5'- -cCAUCGCCCGCcgccuGGCGGaCCGCAUCUg -3'
miRNA:   3'- gaGUAGCGGGCG-----CUGCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 142387 0.76 0.192435
Target:  5'- gCUCAUCGCacggcgaaagcguCCggaguGCGACGGCCgGCAUCCu -3'
miRNA:   3'- -GAGUAGCG-------------GG-----CGCUGCCGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 104594 0.75 0.202198
Target:  5'- -aCGUCGCCCGgGGCcGCCgguaGCACCCc -3'
miRNA:   3'- gaGUAGCGGGCgCUGcCGGg---CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 71086 0.75 0.202198
Target:  5'- -gCGUCaGCCCGCGGuCGGCgugCGCGCCCc -3'
miRNA:   3'- gaGUAG-CGGGCGCU-GCCGg--GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 23562 0.75 0.206997
Target:  5'- ----gUGCCCGCGAgGGCCCcgggggcgGCGCCCc -3'
miRNA:   3'- gaguaGCGGGCGCUgCCGGG--------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 145551 0.75 0.206997
Target:  5'- ----cCGCCCGCGuCGcGCCgGCGCCCc -3'
miRNA:   3'- gaguaGCGGGCGCuGC-CGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 131017 0.75 0.227184
Target:  5'- -cCGcCGCCagGCGACGGgCCGCAUCCa -3'
miRNA:   3'- gaGUaGCGGg-CGCUGCCgGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 25493 0.75 0.232485
Target:  5'- cCUCGggcccgcugCGCCgCGCGGCGGCCUggauGCGCCa -3'
miRNA:   3'- -GAGUa--------GCGG-GCGCUGCCGGG----CGUGGg -5'
5161 5' -62.4 NC_001798.1 + 23076 0.74 0.243399
Target:  5'- -cCGUCGCCCcccccggagcGCGACGGCgCGCaagaagaagcgGCCCg -3'
miRNA:   3'- gaGUAGCGGG----------CGCUGCCGgGCG-----------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 32774 0.74 0.243399
Target:  5'- uCUCGggagcagggcgCGCCCGCGcCGGCCgGCgacGCCCc -3'
miRNA:   3'- -GAGUa----------GCGGGCGCuGCCGGgCG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.