miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 196 0.67 0.578538
Target:  5'- -gCGggCGCCCccGCG-CGGCuuuuuucCCGCGCCCg -3'
miRNA:   3'- gaGUa-GCGGG--CGCuGCCG-------GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 366 0.66 0.647191
Target:  5'- ----cCGCCCGCacACGGuucCCCGcCACCCc -3'
miRNA:   3'- gaguaGCGGGCGc-UGCC---GGGC-GUGGG- -5'
5161 5' -62.4 NC_001798.1 + 471 0.66 0.676174
Target:  5'- ---cUCcCCCGCGGCcgccuccCCCGCGCCCc -3'
miRNA:   3'- gaguAGcGGGCGCUGcc-----GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 527 0.69 0.477055
Target:  5'- -cCcgCGCCCGCGGCcccgaGCUCGCagcaGCCCc -3'
miRNA:   3'- gaGuaGCGGGCGCUGc----CGGGCG----UGGG- -5'
5161 5' -62.4 NC_001798.1 + 1143 0.69 0.468162
Target:  5'- cCUCggCGgcguggccagcCCCGCGGCGGUCCcCACCa -3'
miRNA:   3'- -GAGuaGC-----------GGGCGCUGCCGGGcGUGGg -5'
5161 5' -62.4 NC_001798.1 + 1211 0.79 0.124838
Target:  5'- -cCGUC-CCCGCG-CGGCCCGCGgCCg -3'
miRNA:   3'- gaGUAGcGGGCGCuGCCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 1310 0.77 0.168805
Target:  5'- gCUCGagcagCGCCCGCGcgcagaacucccgccGCGGCCCGCGCa- -3'
miRNA:   3'- -GAGUa----GCGGGCGC---------------UGCCGGGCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 1366 0.67 0.579498
Target:  5'- ----cCGCCgCGC-ACGGCgUCGCGCCCc -3'
miRNA:   3'- gaguaGCGG-GCGcUGCCG-GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 1495 0.77 0.171251
Target:  5'- -gCGUCGCCCGCGcccgaggcgGCGGCCCG-GCCg -3'
miRNA:   3'- gaGUAGCGGGCGC---------UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 1913 0.66 0.68578
Target:  5'- aCUCcacggCGCCgGCGAaGGCCaGguCCCg -3'
miRNA:   3'- -GAGua---GCGGgCGCUgCCGGgCguGGG- -5'
5161 5' -62.4 NC_001798.1 + 2002 0.71 0.368851
Target:  5'- --aGUUGCCCGCccaGGCGGCCguggCGgGCCCg -3'
miRNA:   3'- gagUAGCGGGCG---CUGCCGG----GCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 2106 0.71 0.353759
Target:  5'- ----cCGCCCccgGCG-CGGCCCGCGgCCa -3'
miRNA:   3'- gaguaGCGGG---CGCuGCCGGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 2786 0.69 0.495086
Target:  5'- gCUCAgcaggCGCgggcuCCGCGGCaGCgCCGgGCCCa -3'
miRNA:   3'- -GAGUa----GCG-----GGCGCUGcCG-GGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 2853 0.68 0.560371
Target:  5'- -aCggCGgCCaCGGCGGCCuCGCugCCg -3'
miRNA:   3'- gaGuaGCgGGcGCUGCCGG-GCGugGG- -5'
5161 5' -62.4 NC_001798.1 + 2970 0.67 0.598761
Target:  5'- -gCGUCgGCgUGCGGCggggcggccGGCCCGCggGCCCc -3'
miRNA:   3'- gaGUAG-CGgGCGCUG---------CCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 3187 0.66 0.637499
Target:  5'- gUCGUCGUCgGCccCGGCCgGCGCg- -3'
miRNA:   3'- gAGUAGCGGgCGcuGCCGGgCGUGgg -5'
5161 5' -62.4 NC_001798.1 + 3226 0.72 0.346378
Target:  5'- gCUCAggCGCCCcagGGCGGCgaGCACCCc -3'
miRNA:   3'- -GAGUa-GCGGGcg-CUGCCGggCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 3374 0.69 0.477055
Target:  5'- -gCGUCGCCgccguCGuCGGgGGUUCGCGCCCc -3'
miRNA:   3'- gaGUAGCGG-----GC-GCUgCCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 3499 0.69 0.504218
Target:  5'- gCUCAUgGCCa-CGGCGGCCgccacgUGCGCCa -3'
miRNA:   3'- -GAGUAgCGGgcGCUGCCGG------GCGUGGg -5'
5161 5' -62.4 NC_001798.1 + 3549 0.68 0.545196
Target:  5'- -cCGcCGCCaugGCGuaccccagguggggcACGGCCCGCGCCa -3'
miRNA:   3'- gaGUaGCGGg--CGC---------------UGCCGGGCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.