miRNA display CGI


Results 1 - 20 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5161 5' -62.4 NC_001798.1 + 154534 0.67 0.578538
Target:  5'- -gCGggCGCCCccGCG-CGGCuuuuuucCCGCGCCCg -3'
miRNA:   3'- gaGUa-GCGGG--CGCuGCCG-------GGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 153398 0.68 0.550872
Target:  5'- ----cCGgUCGCGGuCGGCCCGCucgcgcGCCCa -3'
miRNA:   3'- gaguaGCgGGCGCU-GCCGGGCG------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 153283 0.66 0.66557
Target:  5'- cCUCcgCggGUCCGCcgucuucGugGGCCCGgGCUCg -3'
miRNA:   3'- -GAGuaG--CGGGCG-------CugCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 153235 0.73 0.284338
Target:  5'- -----gGCCCGCGGCGGCggaggacCCGCGCgCCg -3'
miRNA:   3'- gaguagCGGGCGCUGCCG-------GGCGUG-GG- -5'
5161 5' -62.4 NC_001798.1 + 153013 0.66 0.68578
Target:  5'- --gGUCGCCgG-GGCGGaguCCGgGCCCg -3'
miRNA:   3'- gagUAGCGGgCgCUGCCg--GGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 152650 0.67 0.618111
Target:  5'- ----cCGCCgGCG-CGGCCCugagugGUGCCCg -3'
miRNA:   3'- gaguaGCGGgCGCuGCCGGG------CGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 152395 0.66 0.66074
Target:  5'- -cCGUCGCUCGCaGugccggggugcgaauGCGGCCCG-ACCg -3'
miRNA:   3'- gaGUAGCGGGCG-C---------------UGCCGGGCgUGGg -5'
5161 5' -62.4 NC_001798.1 + 152135 0.69 0.477055
Target:  5'- -cCAcCGCCCGCGACcacccccaaCCCGCAgCCg -3'
miRNA:   3'- gaGUaGCGGGCGCUGcc-------GGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 151262 0.69 0.459354
Target:  5'- -cCA-CGgCCGUGcCGGCCCGCACggCCg -3'
miRNA:   3'- gaGUaGCgGGCGCuGCCGGGCGUG--GG- -5'
5161 5' -62.4 NC_001798.1 + 150746 0.72 0.317968
Target:  5'- uCUCGgcacgaCGgCCGCGACGGCagggCCGCcCCCa -3'
miRNA:   3'- -GAGUa-----GCgGGCGCUGCCG----GGCGuGGG- -5'
5161 5' -62.4 NC_001798.1 + 149986 0.74 0.259977
Target:  5'- -gCggCGCCCGCGgacgccggggcgaGCGGCCCGUggccgcggucGCCCg -3'
miRNA:   3'- gaGuaGCGGGCGC-------------UGCCGGGCG----------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 149237 0.72 0.324903
Target:  5'- -cCGUgGCCCGCGGgggcgucgcCGGCCggcgcgggCGCGCCCu -3'
miRNA:   3'- gaGUAgCGGGCGCU---------GCCGG--------GCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 148239 0.66 0.626834
Target:  5'- ---cUCGCCC-CGAUGGgagucucCCCGCAgCCa -3'
miRNA:   3'- gaguAGCGGGcGCUGCC-------GGGCGUgGG- -5'
5161 5' -62.4 NC_001798.1 + 147899 0.66 0.682902
Target:  5'- gUCGUCGUUcccgggggggcaggCGCGGgucgGGCCCGUacGCCCa -3'
miRNA:   3'- gAGUAGCGG--------------GCGCUg---CCGGGCG--UGGG- -5'
5161 5' -62.4 NC_001798.1 + 147736 0.66 0.647191
Target:  5'- -gCAcCGCCCGCGAgccaaCCCGUAUCCu -3'
miRNA:   3'- gaGUaGCGGGCGCUgcc--GGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 147201 0.73 0.28497
Target:  5'- ----cCGCCCgGCGGucCGGCCCGgGCCCc -3'
miRNA:   3'- gaguaGCGGG-CGCU--GCCGGGCgUGGG- -5'
5161 5' -62.4 NC_001798.1 + 146980 0.66 0.65397
Target:  5'- uUCcgCGCCUcCGAgGGUCCGCcucuugccucggggACCCc -3'
miRNA:   3'- gAGuaGCGGGcGCUgCCGGGCG--------------UGGG- -5'
5161 5' -62.4 NC_001798.1 + 145717 0.72 0.311145
Target:  5'- -cCAgcgaGCCC-CGGCcccGGCCCGCGCCCc -3'
miRNA:   3'- gaGUag--CGGGcGCUG---CCGGGCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 145551 0.75 0.206997
Target:  5'- ----cCGCCCGCGuCGcGCCgGCGCCCc -3'
miRNA:   3'- gaguaGCGGGCGCuGC-CGGgCGUGGG- -5'
5161 5' -62.4 NC_001798.1 + 145021 0.8 0.102369
Target:  5'- -aCAUCGUCCGCGGgGGUCCGCAUgCa -3'
miRNA:   3'- gaGUAGCGGGCGCUgCCGGGCGUGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.