Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5162 | 3' | -52.8 | NC_001798.1 | + | 113356 | 1.11 | 0.004327 |
Target: 5'- cGGUGGCGCCGGCAUGUAUUAUAGCCGc -3' miRNA: 3'- -CCACCGCGGCCGUACAUAAUAUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 2417 | 0.81 | 0.319826 |
Target: 5'- --gGGCGCCGGCGUGUGgcugGGCCc -3' miRNA: 3'- ccaCCGCGGCCGUACAUaauaUCGGc -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 113317 | 0.81 | 0.327335 |
Target: 5'- uGGUGGcCGCgGGCAUGUAUUacggGUGGaCCGg -3' miRNA: 3'- -CCACC-GCGgCCGUACAUAA----UAUC-GGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 24550 | 0.76 | 0.584477 |
Target: 5'- --cGGCGCCGGCGgugGUGgcggcGGCCGg -3' miRNA: 3'- ccaCCGCGGCCGUa--CAUaaua-UCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 50108 | 0.75 | 0.636586 |
Target: 5'- uGGUGGCGCCGcGCAUGUcgUuucucuCCGc -3' miRNA: 3'- -CCACCGCGGC-CGUACAuaAuauc--GGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 74404 | 0.72 | 0.761984 |
Target: 5'- cGUGGCGCCGGCGgaccugaccGCCGc -3' miRNA: 3'- cCACCGCGGCCGUacauaauauCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 115874 | 0.72 | 0.778298 |
Target: 5'- -aUGGCGCCGGCuacc---AUAGCCGc -3' miRNA: 3'- ccACCGCGGCCGuacauaaUAUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 98584 | 0.72 | 0.797901 |
Target: 5'- cGGUGGCGUCGGCGgccccggcGGCCc -3' miRNA: 3'- -CCACCGCGGCCGUacauaauaUCGGc -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 104906 | 0.71 | 0.840823 |
Target: 5'- aGUGGCGCUGGCccacg-UAcAGCCGg -3' miRNA: 3'- cCACCGCGGCCGuacauaAUaUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 102504 | 0.71 | 0.849031 |
Target: 5'- cGGgccGGCGCCGGgGUGUccguaGGCCa -3' miRNA: 3'- -CCa--CCGCGGCCgUACAuaauaUCGGc -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 39876 | 0.7 | 0.870148 |
Target: 5'- cGGgGGUGCCGGCGUccucggggcgGGCCGg -3' miRNA: 3'- -CCaCCGCGGCCGUAcauaaua---UCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 151602 | 0.7 | 0.886862 |
Target: 5'- -cUGGCGCuCGGCcgGgggccgGGCCGg -3' miRNA: 3'- ccACCGCG-GCCGuaCauaauaUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 111000 | 0.69 | 0.893746 |
Target: 5'- --aGGCGCgCGGUAUGc---GUGGCCGc -3' miRNA: 3'- ccaCCGCG-GCCGUACauaaUAUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 85997 | 0.69 | 0.893746 |
Target: 5'- cGG-GGCGCUGGCGcagGgggGUg--AGCCGg -3' miRNA: 3'- -CCaCCGCGGCCGUa--Ca--UAauaUCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 36487 | 0.69 | 0.902338 |
Target: 5'- aGGgGGCGCCGGCGcgacgcgggcGGCCGg -3' miRNA: 3'- -CCaCCGCGGCCGUacauaaua--UCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 111307 | 0.69 | 0.910519 |
Target: 5'- cGUGGCGCUGG-AUGUAccgaccgacgAGCCGc -3' miRNA: 3'- cCACCGCGGCCgUACAUaaua------UCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 150845 | 0.69 | 0.915348 |
Target: 5'- aGGgGGCGCCGGUcgGgucgcggcgGGCUGg -3' miRNA: 3'- -CCaCCGCGGCCGuaCauaaua---UCGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 20339 | 0.69 | 0.917702 |
Target: 5'- aGGUGGCGCaGGCG-GUuggcgcuGCCGg -3' miRNA: 3'- -CCACCGCGgCCGUaCAuaauau-CGGC- -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 96707 | 0.69 | 0.918865 |
Target: 5'- uGGUGGCGgCGGUggGg--UcgGGCCu -3' miRNA: 3'- -CCACCGCgGCCGuaCauaAuaUCGGc -5' |
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5162 | 3' | -52.8 | NC_001798.1 | + | 4399 | 0.68 | 0.924528 |
Target: 5'- uGGUGGUGUCGGCggGgc-----GCCGg -3' miRNA: 3'- -CCACCGCGGCCGuaCauaauauCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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