miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5162 3' -52.8 NC_001798.1 + 2417 0.81 0.319826
Target:  5'- --gGGCGCCGGCGUGUGgcugGGCCc -3'
miRNA:   3'- ccaCCGCGGCCGUACAUaauaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 3709 0.66 0.97357
Target:  5'- ---cGCGuCCGGCGUGUAcagcAGCCGc -3'
miRNA:   3'- ccacCGC-GGCCGUACAUaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 4366 0.66 0.97357
Target:  5'- cGGgggGcGCGCCGGCGgcgGUGgugGUGGUg- -3'
miRNA:   3'- -CCa--C-CGCGGCCGUa--CAUaa-UAUCGgc -5'
5162 3' -52.8 NC_001798.1 + 4399 0.68 0.924528
Target:  5'- uGGUGGUGUCGGCggGgc-----GCCGg -3'
miRNA:   3'- -CCACCGCGGCCGuaCauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 20339 0.69 0.917702
Target:  5'- aGGUGGCGCaGGCG-GUuggcgcuGCCGg -3'
miRNA:   3'- -CCACCGCGgCCGUaCAuaauau-CGGC- -5'
5162 3' -52.8 NC_001798.1 + 24550 0.76 0.584477
Target:  5'- --cGGCGCCGGCGgugGUGgcggcGGCCGg -3'
miRNA:   3'- ccaCCGCGGCCGUa--CAUaaua-UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 25998 0.67 0.949118
Target:  5'- -cUGGCcuCCGGCcgcGUGUUcgGGCCGg -3'
miRNA:   3'- ccACCGc-GGCCGua-CAUAAuaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 26524 0.68 0.940023
Target:  5'- cGGcgGGCGgCGGCGUGgag-GUGGUgGg -3'
miRNA:   3'- -CCa-CCGCgGCCGUACauaaUAUCGgC- -5'
5162 3' -52.8 NC_001798.1 + 28663 0.66 0.976197
Target:  5'- cGGUuccGGCGCC-GCGUGgcggc-GGCCGa -3'
miRNA:   3'- -CCA---CCGCGGcCGUACauaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 29599 0.66 0.980215
Target:  5'- --aGGCGCCGGguauaaggcagcccCGUGUGacggUcgGGCCGc -3'
miRNA:   3'- ccaCCGCGGCC--------------GUACAUa---AuaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 36042 0.66 0.980652
Target:  5'- gGGUGGCggcggugGUCGGCGUGcu-----GCCGg -3'
miRNA:   3'- -CCACCG-------CGGCCGUACauaauauCGGC- -5'
5162 3' -52.8 NC_001798.1 + 36487 0.69 0.902338
Target:  5'- aGGgGGCGCCGGCGcgacgcgggcGGCCGg -3'
miRNA:   3'- -CCaCCGCGGCCGUacauaaua--UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 39552 0.68 0.944693
Target:  5'- gGGUGGCGCCGG----------GGCCGu -3'
miRNA:   3'- -CCACCGCGGCCguacauaauaUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 39876 0.7 0.870148
Target:  5'- cGGgGGUGCCGGCGUccucggggcgGGCCGg -3'
miRNA:   3'- -CCaCCGCGGCCGUAcauaaua---UCGGC- -5'
5162 3' -52.8 NC_001798.1 + 41378 0.67 0.960958
Target:  5'- -aUGGCGCCGGgG------AUGGCCGg -3'
miRNA:   3'- ccACCGCGGCCgUacauaaUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 49711 0.68 0.940023
Target:  5'- -cUGGCGCCaguuGGCGUGUcuGUUucAGCCc -3'
miRNA:   3'- ccACCGCGG----CCGUACA--UAAuaUCGGc -5'
5162 3' -52.8 NC_001798.1 + 50108 0.75 0.636586
Target:  5'- uGGUGGCGCCGcGCAUGUcgUuucucuCCGc -3'
miRNA:   3'- -CCACCGCGGC-CGUACAuaAuauc--GGC- -5'
5162 3' -52.8 NC_001798.1 + 54580 0.67 0.967699
Target:  5'- --cGGCcgGCCGGCcacGUAUuacacgcaUAUGGCCGg -3'
miRNA:   3'- ccaCCG--CGGCCGua-CAUA--------AUAUCGGC- -5'
5162 3' -52.8 NC_001798.1 + 65858 0.67 0.96444
Target:  5'- gGGUGGC-CUGGUA-GUG--GUGGCCu -3'
miRNA:   3'- -CCACCGcGGCCGUaCAUaaUAUCGGc -5'
5162 3' -52.8 NC_001798.1 + 68783 0.66 0.980868
Target:  5'- --gGGUgGCCGGUGUGU---GUGGCCu -3'
miRNA:   3'- ccaCCG-CGGCCGUACAuaaUAUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.