Results 41 - 60 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5165 | 3' | -54.3 | NC_001798.1 | + | 66367 | 0.67 | 0.926229 |
Target: 5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3' miRNA: 3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 66621 | 0.67 | 0.926229 |
Target: 5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3' miRNA: 3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 34958 | 0.67 | 0.926229 |
Target: 5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3' miRNA: 3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 97565 | 0.67 | 0.926229 |
Target: 5'- cGCGAGCgAGG---ACGGgGAGC-GCGg -3' miRNA: 3'- -CGCUCGgUCCguuUGCCaUUCGuCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 15040 | 0.67 | 0.926229 |
Target: 5'- cGgGAGCgugGGGCGGAUGGgcccgGGGCGcGCGg -3' miRNA: 3'- -CgCUCGg--UCCGUUUGCCa----UUCGU-CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 4049 | 0.67 | 0.922926 |
Target: 5'- cGCGGGCCcGGCGGcgcuccaggcggcccGCGGUcgccGCGGgGg -3' miRNA: 3'- -CGCUCGGuCCGUU---------------UGCCAuu--CGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 152291 | 0.67 | 0.920676 |
Target: 5'- aUGAGCCGGGguAG-GGUAgacucgagacGGCGGCc -3' miRNA: 3'- cGCUCGGUCCguUUgCCAU----------UCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 1793 | 0.67 | 0.920676 |
Target: 5'- cGCaGGCCAGGUAGGCGugcuGCcGCGa -3' miRNA: 3'- -CGcUCGGUCCGUUUGCcauuCGuCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 97756 | 0.67 | 0.920676 |
Target: 5'- uGCGGGUCAGcGUccACGGcGAGguGCu -3' miRNA: 3'- -CGCUCGGUC-CGuuUGCCaUUCguCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 42477 | 0.67 | 0.918962 |
Target: 5'- aGgGAGCCgugcacaacguacgGGGCGGGgacCGGUAGGCAcacGCGc -3' miRNA: 3'- -CgCUCGG--------------UCCGUUU---GCCAUUCGU---CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2831 | 0.67 | 0.914877 |
Target: 5'- gGCGA-CCAGGCucACGGcgcgcacGGCGGCc -3' miRNA: 3'- -CGCUcGGUCCGuuUGCCau-----UCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 12502 | 0.67 | 0.914877 |
Target: 5'- aCGGGCCcagAGGUAcACGG-GAGCGGgGa -3' miRNA: 3'- cGCUCGG---UCCGUuUGCCaUUCGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 51332 | 0.67 | 0.914877 |
Target: 5'- uUGGGgCGGGUggGCGGUucGCGGg- -3' miRNA: 3'- cGCUCgGUCCGuuUGCCAuuCGUCgc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 53924 | 0.67 | 0.914877 |
Target: 5'- cGCGGGCCcagcGGCAccACGGgcucgauGCAGUGc -3' miRNA: 3'- -CGCUCGGu---CCGUu-UGCCauu----CGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 126129 | 0.67 | 0.914877 |
Target: 5'- gGCGA-CCuGGCGGACGGauggaUGAGUccgGGCGa -3' miRNA: 3'- -CGCUcGGuCCGUUUGCC-----AUUCG---UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2258 | 0.67 | 0.914877 |
Target: 5'- cGCGccGCCGGG-GGGCGG--GGCGGCGc -3' miRNA: 3'- -CGCu-CGGUCCgUUUGCCauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 10885 | 0.67 | 0.914877 |
Target: 5'- cGCGAGCCAuguucggguGGCAGGagccguCGGUcgGGGCAGa- -3' miRNA: 3'- -CGCUCGGU---------CCGUUU------GCCA--UUCGUCgc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 27527 | 0.67 | 0.914877 |
Target: 5'- cGCGGGa-AGGCAGccccgcggcgcGCGGggggagGGGCGGCGc -3' miRNA: 3'- -CGCUCggUCCGUU-----------UGCCa-----UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 154282 | 0.67 | 0.914877 |
Target: 5'- uGCGcAGcCCGGGCcguguuGCGGgcccucuuaagGGGCGGCGg -3' miRNA: 3'- -CGC-UC-GGUCCGuu----UGCCa----------UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 38225 | 0.67 | 0.91128 |
Target: 5'- cGCGcGGCCAGGCAcGCGGgguccguuuuggucgUGuGCAGgGc -3' miRNA: 3'- -CGC-UCGGUCCGUuUGCC---------------AUuCGUCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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