miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 3296 0.7 0.80971
Target:  5'- gGCGAcGCCGccgccgacGGC-AACGGggcGGCGGCGg -3'
miRNA:   3'- -CGCU-CGGU--------CCGuUUGCCau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 4049 0.67 0.922926
Target:  5'- cGCGGGCCcGGCGGcgcuccaggcggcccGCGGUcgccGCGGgGg -3'
miRNA:   3'- -CGCUCGGuCCGUU---------------UGCCAuu--CGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 4843 0.75 0.538887
Target:  5'- cGCGcGGCgGGGCGAcgguccggguucGgGGUGGGCGGCGg -3'
miRNA:   3'- -CGC-UCGgUCCGUU------------UgCCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 5909 0.68 0.89602
Target:  5'- cCGAGgCGGGCccGGACGGggGGCGGg- -3'
miRNA:   3'- cGCUCgGUCCG--UUUGCCauUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 6232 0.69 0.827197
Target:  5'- gGCcGGCCGGGgGGACGGgcGGgGGaCGg -3'
miRNA:   3'- -CGcUCGGUCCgUUUGCCauUCgUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 6265 0.7 0.800713
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGaCGg -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 6304 0.7 0.800713
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGaCGg -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 6356 0.72 0.683183
Target:  5'- aCGGGCCGGGgGGACGGgccGGGgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCa--UUCgUCGc -5'
5165 3' -54.3 NC_001798.1 + 6400 0.71 0.763248
Target:  5'- gGgGGGCCGGGgGGACGGggGGaCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCgUUUGCCauUC-GUCgC- -5'
5165 3' -54.3 NC_001798.1 + 6542 0.69 0.81854
Target:  5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5'
5165 3' -54.3 NC_001798.1 + 6584 0.69 0.81854
Target:  5'- aCGGGCCGGGgGGACGGggGGacgGGCc -3'
miRNA:   3'- cGCUCGGUCCgUUUGCCauUCg--UCGc -5'
5165 3' -54.3 NC_001798.1 + 8548 0.7 0.79156
Target:  5'- cGUGGGUCGcGGCGAGgGGUGGG-GGCGa -3'
miRNA:   3'- -CGCUCGGU-CCGUUUgCCAUUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 8796 0.7 0.79156
Target:  5'- aCGGGCgAGGCc-GCGGgguaAAGCGGCa -3'
miRNA:   3'- cGCUCGgUCCGuuUGCCa---UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 9056 0.73 0.621031
Target:  5'- gGCGAGCCAGGUGAcgaauUGGgaGGgGGCGu -3'
miRNA:   3'- -CGCUCGGUCCGUUu----GCCauUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 9658 0.66 0.950315
Target:  5'- aGCGGGCCGcGC--GCGGaGGGC-GCGg -3'
miRNA:   3'- -CGCUCGGUcCGuuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 9926 0.69 0.852037
Target:  5'- uGCGAGCCucGGCAAAacauc-GCGGCGg -3'
miRNA:   3'- -CGCUCGGu-CCGUUUgccauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 10885 0.67 0.914877
Target:  5'- cGCGAGCCAuguucggguGGCAGGagccguCGGUcgGGGCAGa- -3'
miRNA:   3'- -CGCUCGGU---------CCGUUU------GCCA--UUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 11248 0.68 0.875033
Target:  5'- uGCgGGGCCgAGGacuGACGGacAGCAGCa -3'
miRNA:   3'- -CG-CUCGG-UCCgu-UUGCCauUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 12324 0.72 0.683183
Target:  5'- aGCG-GCCGGGCAuaccgggaucgGACGGgucgAGGUGGCu -3'
miRNA:   3'- -CGCuCGGUCCGU-----------UUGCCa---UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 12502 0.67 0.914877
Target:  5'- aCGGGCCcagAGGUAcACGG-GAGCGGgGa -3'
miRNA:   3'- cGCUCGG---UCCGUuUGCCaUUCGUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.