miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 69 0.74 0.559166
Target:  5'- gGCGGGCggcggcggCGGGCGGGCGGcaGGGCAGCc -3'
miRNA:   3'- -CGCUCG--------GUCCGUUUGCCa-UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 1382 0.67 0.908833
Target:  5'- cGCGccccagcGCCAcGUAGACGGgccGCAGCGg -3'
miRNA:   3'- -CGCu------CGGUcCGUUUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1477 0.69 0.843953
Target:  5'- gGCGcGCCGGGCGccAugGcGUcgcccgcgcccgAGGCGGCGg -3'
miRNA:   3'- -CGCuCGGUCCGU--UugC-CA------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1752 0.66 0.954409
Target:  5'- cGCcGGCCAGcGCAcggcgcacugcACGGcGGGCAGCa -3'
miRNA:   3'- -CGcUCGGUC-CGUu----------UGCCaUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 1793 0.67 0.920676
Target:  5'- cGCaGGCCAGGUAGGCGugcuGCcGCGa -3'
miRNA:   3'- -CGcUCGGUCCGUUUGCcauuCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 1836 0.69 0.830608
Target:  5'- gGCGGGCCAguccgcggcgcgcacGGCGuugacGACGaugAGGCGGCGg -3'
miRNA:   3'- -CGCUCGGU---------------CCGU-----UUGCca-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1926 0.67 0.931535
Target:  5'- gGCGAagGCCAGGUcccGCGuGgacAGCAGCa -3'
miRNA:   3'- -CGCU--CGGUCCGuu-UGC-Cau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 2123 0.67 0.908833
Target:  5'- cGCG-GCCAGGUccuCGcccGGCAGCGg -3'
miRNA:   3'- -CGCuCGGUCCGuuuGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2220 0.79 0.325035
Target:  5'- aGCGGGCCcgAGGCGcgcAGCGGgccgaAGGCGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGU---UUGCCa----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2258 0.67 0.914877
Target:  5'- cGCGccGCCGGG-GGGCGG--GGCGGCGc -3'
miRNA:   3'- -CGCu-CGGUCCgUUUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2325 0.66 0.945984
Target:  5'- -aGGGCCGGGCGccacggcGCGGggAAG-AGCGg -3'
miRNA:   3'- cgCUCGGUCCGUu------UGCCa-UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2424 0.69 0.852037
Target:  5'- gGCGuguGGCUGGGCcccGGCGGcuGGCGGCGc -3'
miRNA:   3'- -CGC---UCGGUCCGu--UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2483 0.73 0.641803
Target:  5'- gGCGGGCC-GGCGGgucagcgccGCGGggcGCGGCGg -3'
miRNA:   3'- -CGCUCGGuCCGUU---------UGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2529 0.66 0.935104
Target:  5'- gGCGucGGCgGGGCGGggggcgcggcccccGCGGgagGGGCGGCc -3'
miRNA:   3'- -CGC--UCGgUCCGUU--------------UGCCa--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 2697 0.7 0.79156
Target:  5'- aGCGAGUCGGccGCGgcGACGGUGucggccAGCAGgGg -3'
miRNA:   3'- -CGCUCGGUC--CGU--UUGCCAU------UCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 2831 0.67 0.914877
Target:  5'- gGCGA-CCAGGCucACGGcgcgcacGGCGGCc -3'
miRNA:   3'- -CGCUcGGUCCGuuUGCCau-----UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 2944 0.74 0.550011
Target:  5'- cGCGcAGCCAGGCGcgcaGGCGGggcgcgucggcguGCGGCGg -3'
miRNA:   3'- -CGC-UCGGUCCGU----UUGCCauu----------CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2998 0.74 0.579652
Target:  5'- cGCGGGCCccGGGC--GCGGgggcGCGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGuuUGCCauu-CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 3106 0.69 0.843953
Target:  5'- gGCG-GCCAGGCAcuccACGGccacGCGGCc -3'
miRNA:   3'- -CGCuCGGUCCGUu---UGCCauu-CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 3220 0.66 0.936596
Target:  5'- cGCGGcGCuCAGGCGccccagGGCGGcGAGCAcccccGCGg -3'
miRNA:   3'- -CGCU-CG-GUCCGU------UUGCCaUUCGU-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.