miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 110860 1.11 0.00314
Target:  5'- cGCGAGCCAGGCAAACGGUAAGCAGCGc -3'
miRNA:   3'- -CGCUCGGUCCGUUUGCCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 146581 0.81 0.250344
Target:  5'- cGCGGGCCA-GCAGACGGgccGCGGCGc -3'
miRNA:   3'- -CGCUCGGUcCGUUUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 93117 0.81 0.269198
Target:  5'- -aGGGCCcGGCGGGCGGguuUGAGCAGCGc -3'
miRNA:   3'- cgCUCGGuCCGUUUGCC---AUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2220 0.79 0.325035
Target:  5'- aGCGGGCCcgAGGCGcgcAGCGGgccgaAGGCGGCGg -3'
miRNA:   3'- -CGCUCGG--UCCGU---UUGCCa----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 69182 0.79 0.340275
Target:  5'- gGCGGGCCAGGUggGggagguCGGUGGGguGCc -3'
miRNA:   3'- -CGCUCGGUCCGuuU------GCCAUUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 146423 0.78 0.380598
Target:  5'- gGCGAGCCGGGCAGaguGCGGagcccccgGAGCccGCGg -3'
miRNA:   3'- -CGCUCGGUCCGUU---UGCCa-------UUCGu-CGC- -5'
5165 3' -54.3 NC_001798.1 + 26495 0.77 0.415077
Target:  5'- cGCGGGCCGcGCGggGACGGUGcuggccgcggcgGGCGGCGg -3'
miRNA:   3'- -CGCUCGGUcCGU--UUGCCAU------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 106111 0.77 0.415077
Target:  5'- cGCGAccGCCGGGUcuGCGGUuccGGCGGCa -3'
miRNA:   3'- -CGCU--CGGUCCGuuUGCCAu--UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 146092 0.76 0.442159
Target:  5'- gGCGAGgCGGGCGGGCgaaggaagggggGGUGguGGCGGCGg -3'
miRNA:   3'- -CGCUCgGUCCGUUUG------------CCAU--UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 58984 0.76 0.479764
Target:  5'- gGCG-GCCGGGCGAACGcGggGGgGGCGc -3'
miRNA:   3'- -CGCuCGGUCCGUUUGC-CauUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 26927 0.76 0.489409
Target:  5'- cGgGGGUCGGGCGGGCGGggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa---UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 27016 0.75 0.499144
Target:  5'- cGgGGGUCGGGCGGGCGGgggucgggcGGGCGGCa -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa--------UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 130909 0.75 0.508964
Target:  5'- gGUGGGCCAgcuGGCugauGCGGUGGGcCAGCa -3'
miRNA:   3'- -CGCUCGGU---CCGuu--UGCCAUUC-GUCGc -5'
5165 3' -54.3 NC_001798.1 + 106210 0.75 0.518865
Target:  5'- aCGAGCCGGGuCAcGCGGcUGAcgcGCAGCGu -3'
miRNA:   3'- cGCUCGGUCC-GUuUGCC-AUU---CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 148280 0.75 0.518865
Target:  5'- gGCGGGCguGGCGGGCaGGUGuGCGGgCGg -3'
miRNA:   3'- -CGCUCGguCCGUUUG-CCAUuCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 148387 0.75 0.518865
Target:  5'- gGCGGGCguGGCGGGCaGGUGuGCGGgCGg -3'
miRNA:   3'- -CGCUCGguCCGUUUG-CCAUuCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 4843 0.75 0.538887
Target:  5'- cGCGcGGCgGGGCGAcgguccggguucGgGGUGGGCGGCGg -3'
miRNA:   3'- -CGC-UCGgUCCGUU------------UgCCAUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 26807 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26971 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5'
5165 3' -54.3 NC_001798.1 + 26852 0.75 0.538887
Target:  5'- cGgGGGUCGGGCGGGCGGgggucGGGCGGgCGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUGCCa----UUCGUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.