miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 5' -63.4 NC_001798.1 + 110896 1.09 0.00077
Target:  5'- aCCCGGCGGUUCGCGUGCGGCCAGCCGc -3'
miRNA:   3'- -GGGCCGCCAAGCGCACGCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 74034 0.81 0.079664
Target:  5'- aCCCGGCGGcgCGCG-GCGGCCuGCg- -3'
miRNA:   3'- -GGGCCGCCaaGCGCaCGCCGGuCGgc -5'
5165 5' -63.4 NC_001798.1 + 37404 0.8 0.085877
Target:  5'- aCCgGGCGGgUC-CGUGgGGCCGGCCGa -3'
miRNA:   3'- -GGgCCGCCaAGcGCACgCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 88081 0.79 0.097269
Target:  5'- -gCGGCGGcgucuagcUCGCGgaggGCGGCCAGCCGc -3'
miRNA:   3'- ggGCCGCCa-------AGCGCa---CGCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 24554 0.79 0.107396
Target:  5'- gCCGGCGGUggUgGCG-GCGGCCGGCgCGc -3'
miRNA:   3'- gGGCCGCCA--AgCGCaCGCCGGUCG-GC- -5'
5165 5' -63.4 NC_001798.1 + 91605 0.79 0.110078
Target:  5'- gCCCGGCaGgcCGCGcuuauggGCGGCCGGCCGc -3'
miRNA:   3'- -GGGCCGcCaaGCGCa------CGCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 36554 0.78 0.115632
Target:  5'- gCCgGGCGGgggCGCGcgGCGGCCGGgCGg -3'
miRNA:   3'- -GGgCCGCCaa-GCGCa-CGCCGGUCgGC- -5'
5165 5' -63.4 NC_001798.1 + 36596 0.78 0.115632
Target:  5'- gCCgGGCGGgggCGCGcgGCGGCCGGgCGg -3'
miRNA:   3'- -GGgCCGCCaa-GCGCa-CGCCGGUCgGC- -5'
5165 5' -63.4 NC_001798.1 + 36512 0.78 0.115632
Target:  5'- gCCgGGCGGgggCGCGcgGCGGCCGGgCGg -3'
miRNA:   3'- -GGgCCGCCaa-GCGCa-CGCCGGUCgGC- -5'
5165 5' -63.4 NC_001798.1 + 119431 0.78 0.124151
Target:  5'- cCCCGGCGGUUCGgGUGUGuacguucgacggcGCC-GCCGu -3'
miRNA:   3'- -GGGCCGCCAAGCgCACGC-------------CGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 2438 0.77 0.13719
Target:  5'- cCCCGGCGGcUgGCG-GC-GCCAGCCGc -3'
miRNA:   3'- -GGGCCGCCaAgCGCaCGcCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 147224 0.76 0.178588
Target:  5'- cCCCGGCGGagCGCGgggGCcccggggccccgGGCCGcGCCGg -3'
miRNA:   3'- -GGGCCGCCaaGCGCa--CG------------CCGGU-CGGC- -5'
5165 5' -63.4 NC_001798.1 + 2961 0.75 0.181568
Target:  5'- --aGGCGGggCGCGUcggcgugcggcgggGCGGCCGGCCc -3'
miRNA:   3'- gggCCGCCaaGCGCA--------------CGCCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 43365 0.75 0.191668
Target:  5'- cCCCGGgGGUUguuggUGCGaacGCgGGCCAGCCGu -3'
miRNA:   3'- -GGGCCgCCAA-----GCGCa--CG-CCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 4004 0.75 0.191668
Target:  5'- gCCCGGCcGUgaagcggcccgUgGCGUcGCGGCCGGCCa -3'
miRNA:   3'- -GGGCCGcCA-----------AgCGCA-CGCCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 143814 0.75 0.200849
Target:  5'- gCCCgGGCGG--CGC--GCGGCCAGCCGu -3'
miRNA:   3'- -GGG-CCGCCaaGCGcaCGCCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 95673 0.74 0.215336
Target:  5'- uUCGGCGGUUUgGCGgcgGCGGCgggggCGGCCGg -3'
miRNA:   3'- gGGCCGCCAAG-CGCa--CGCCG-----GUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 52585 0.74 0.215336
Target:  5'- -aCGGUGG-UCGCGUGCguGGCCcuGGCCGc -3'
miRNA:   3'- ggGCCGCCaAGCGCACG--CCGG--UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 27217 0.74 0.225484
Target:  5'- cCCCggGGCGGggCGCGggggagGCGGCCgcgggggaggcGGCCGc -3'
miRNA:   3'- -GGG--CCGCCaaGCGCa-----CGCCGG-----------UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 36143 0.73 0.241464
Target:  5'- gCCGGUGGggCGCG-GCGG-CGGUCGg -3'
miRNA:   3'- gGGCCGCCaaGCGCaCGCCgGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.