miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 5' -63.4 NC_001798.1 + 1878 0.66 0.63993
Target:  5'- -gCGGCGG-UCGCaG-GC-GCCGGCCa -3'
miRNA:   3'- ggGCCGCCaAGCG-CaCGcCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 2275 0.69 0.454207
Target:  5'- --gGGCGGcgCaGCGcGCGGCCAGCg- -3'
miRNA:   3'- gggCCGCCaaG-CGCaCGCCGGUCGgc -5'
5165 5' -63.4 NC_001798.1 + 2438 0.77 0.13719
Target:  5'- cCCCGGCGGcUgGCG-GC-GCCAGCCGc -3'
miRNA:   3'- -GGGCCGCCaAgCGCaCGcCGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 2488 0.7 0.388129
Target:  5'- gCCGGCGGgucagcgcCGCGgggcGCGGC-GGCCGc -3'
miRNA:   3'- gGGCCGCCaa------GCGCa---CGCCGgUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 2532 0.69 0.451619
Target:  5'- gUCGGCGGggCGgGgggcGCGGCCcccgcgggaggggcGGCCGc -3'
miRNA:   3'- gGGCCGCCaaGCgCa---CGCCGG--------------UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 2859 0.72 0.314918
Target:  5'- gCCaCGGCGGccUCGC-UGCcGCCGGCCa -3'
miRNA:   3'- -GG-GCCGCCa-AGCGcACGcCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 2961 0.75 0.181568
Target:  5'- --aGGCGGggCGCGUcggcgugcggcgggGCGGCCGGCCc -3'
miRNA:   3'- gggCCGCCaaGCGCA--------------CGCCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 3004 0.68 0.471663
Target:  5'- cCCCGggcGCGGgggCGCGgcggGCcgggcuccGGCCAGCCc -3'
miRNA:   3'- -GGGC---CGCCaa-GCGCa---CG--------CCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 3268 0.7 0.365029
Target:  5'- gCCGGCGGgcacCGCGcGCucGUCGGCCGg -3'
miRNA:   3'- gGGCCGCCaa--GCGCaCGc-CGGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 3388 0.69 0.428698
Target:  5'- gUCGGgGGUUCGCGcccCGGUCAGCg- -3'
miRNA:   3'- gGGCCgCCAAGCGCac-GCCGGUCGgc -5'
5165 5' -63.4 NC_001798.1 + 4004 0.75 0.191668
Target:  5'- gCCCGGCcGUgaagcggcccgUgGCGUcGCGGCCGGCCa -3'
miRNA:   3'- -GGGCCGcCA-----------AgCGCA-CGCCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 4054 0.69 0.437108
Target:  5'- gCCCGGCGG--CGCuccagGCGGCCcgcGGUCGc -3'
miRNA:   3'- -GGGCCGCCaaGCGca---CGCCGG---UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 4218 0.67 0.563371
Target:  5'- gCUGGCGGgggCGCGgGCGGCgucGUCGu -3'
miRNA:   3'- gGGCCGCCaa-GCGCaCGCCGgu-CGGC- -5'
5165 5' -63.4 NC_001798.1 + 4361 0.67 0.582369
Target:  5'- gCCGGCGGggggCGCGccgGCGG-CGGUgGu -3'
miRNA:   3'- gGGCCGCCaa--GCGCa--CGCCgGUCGgC- -5'
5165 5' -63.4 NC_001798.1 + 4417 0.68 0.489452
Target:  5'- gCCGGgGG-UCGCG-GCgacaGGCUGGCCa -3'
miRNA:   3'- gGGCCgCCaAGCGCaCG----CCGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 4495 0.67 0.582369
Target:  5'- aCCCaGCGGccCGCGUcGCGGUC-GUCGu -3'
miRNA:   3'- -GGGcCGCCaaGCGCA-CGCCGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 5121 0.66 0.600534
Target:  5'- cCCCGuGCGGUgcgUGCGUGUGccugugucuuuucGCCucuccgcGCCGa -3'
miRNA:   3'- -GGGC-CGCCAa--GCGCACGC-------------CGGu------CGGC- -5'
5165 5' -63.4 NC_001798.1 + 5180 0.67 0.535205
Target:  5'- uCCUGGCGGc-CGCGU-CGG-UAGCCGc -3'
miRNA:   3'- -GGGCCGCCaaGCGCAcGCCgGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 6021 0.66 0.63416
Target:  5'- -gCGGCGGcaUCGCGaagGgGGCCAcagcgagacagagacGCCGg -3'
miRNA:   3'- ggGCCGCCa-AGCGCa--CgCCGGU---------------CGGC- -5'
5165 5' -63.4 NC_001798.1 + 7057 0.66 0.605328
Target:  5'- cCCCGGCccacccccaaaccccGGUUgG-G-GCGGgCAGCCGa -3'
miRNA:   3'- -GGGCCG---------------CCAAgCgCaCGCCgGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.