miRNA display CGI


Results 81 - 100 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 126715 0.67 0.846931
Target:  5'- gACCCUGcucguGGGGGAGUGCGcuCUucGCGCg -3'
miRNA:   3'- -UGGGGC-----UCCUCUCGUGCuuGA--UGCGg -5'
5169 5' -56.6 NC_001798.1 + 134660 0.67 0.844552
Target:  5'- gGCCCCGcggacacccgcagcGGGucacGGCGCGGguGCUGCuGCCg -3'
miRNA:   3'- -UGGGGC--------------UCCuc--UCGUGCU--UGAUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 118812 0.67 0.838935
Target:  5'- uGCCCCGuGGAc--CugGGGCUcacgcACGCCg -3'
miRNA:   3'- -UGGGGCuCCUcucGugCUUGA-----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 150081 0.67 0.838935
Target:  5'- cCCCUGGGGGGcgaGGgGCGAGCgcgggGCGgCg -3'
miRNA:   3'- uGGGGCUCCUC---UCgUGCUUGa----UGCgG- -5'
5169 5' -56.6 NC_001798.1 + 77974 0.67 0.838935
Target:  5'- cGCCUCGGcuGGAGCGCGGcguuCcACGCCg -3'
miRNA:   3'- -UGGGGCUccUCUCGUGCUu---GaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 146444 0.67 0.838935
Target:  5'- aGCCCCc-GGAGcccgcggccgcAGC-CGAGCaGCGCCg -3'
miRNA:   3'- -UGGGGcuCCUC-----------UCGuGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 25540 0.67 0.837314
Target:  5'- gACCCgGAGGAcGuGCGCGuggugauccucuACU-CGCCg -3'
miRNA:   3'- -UGGGgCUCCU-CuCGUGCu-----------UGAuGCGG- -5'
5169 5' -56.6 NC_001798.1 + 116315 0.68 0.830756
Target:  5'- gACUgCCGgauugacgcGGGGGGGCACGAGCccgucUACGCg -3'
miRNA:   3'- -UGG-GGC---------UCCUCUCGUGCUUG-----AUGCGg -5'
5169 5' -56.6 NC_001798.1 + 43364 0.68 0.830756
Target:  5'- uCCCCGGGGGuuguuGGUGCGAACgcggGCCa -3'
miRNA:   3'- uGGGGCUCCUc----UCGUGCUUGaug-CGG- -5'
5169 5' -56.6 NC_001798.1 + 146483 0.68 0.830756
Target:  5'- gGCUCCGGGGccGGGC-CGGGCcggcaACGCCc -3'
miRNA:   3'- -UGGGGCUCCu-CUCGuGCUUGa----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 77696 0.68 0.830756
Target:  5'- cGCgCCCGGGGc-AGCAgCGAgcGCUGgGCCg -3'
miRNA:   3'- -UG-GGGCUCCucUCGU-GCU--UGAUgCGG- -5'
5169 5' -56.6 NC_001798.1 + 142489 0.68 0.829929
Target:  5'- cCCCCGAGGcggcgcgGGGGUGCGAua-ACGCa -3'
miRNA:   3'- uGGGGCUCC-------UCUCGUGCUugaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 2091 0.68 0.822401
Target:  5'- cACUCCGGGGGGGGCcCGcccccgGCGCg -3'
miRNA:   3'- -UGGGGCUCCUCUCGuGCuuga--UGCGg -5'
5169 5' -56.6 NC_001798.1 + 76120 0.68 0.822401
Target:  5'- uCCaCCGGGGAGccguauacAGCGCGAAggccCUGCagGCCa -3'
miRNA:   3'- uGG-GGCUCCUC--------UCGUGCUU----GAUG--CGG- -5'
5169 5' -56.6 NC_001798.1 + 115835 0.68 0.822401
Target:  5'- gACgCCCGGGGccuGGAGCuCGGcgUugGCCg -3'
miRNA:   3'- -UG-GGGCUCC---UCUCGuGCUugAugCGG- -5'
5169 5' -56.6 NC_001798.1 + 132141 0.68 0.822401
Target:  5'- uGCgCCGccGGGGGCcgGCGGGCgggGCGCCc -3'
miRNA:   3'- -UGgGGCucCUCUCG--UGCUUGa--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 20759 0.68 0.822401
Target:  5'- cCCCCGAgcucccgcGGGGAGCgACG-GCgccCGCCg -3'
miRNA:   3'- uGGGGCU--------CCUCUCG-UGCuUGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 75365 0.68 0.822401
Target:  5'- cGCaCCCGGGGcu-GUugGAGCUcuGCGUCa -3'
miRNA:   3'- -UG-GGGCUCCucuCGugCUUGA--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 78430 0.68 0.822401
Target:  5'- aGCCCCGuGaAGAaCACGGcgUACGCCg -3'
miRNA:   3'- -UGGGGCuCcUCUcGUGCUugAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133492 0.68 0.819861
Target:  5'- cCCCCGcgcGGGuccgugagcgagacGGAGCACGcGCUGuCGCUg -3'
miRNA:   3'- uGGGGC---UCC--------------UCUCGUGCuUGAU-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.