miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 98524 0.67 0.869749
Target:  5'- gGCCCgccaugcgCGGGGGGGGCuuGAuUUGCGCg -3'
miRNA:   3'- -UGGG--------GCUCCUCUCGugCUuGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 28248 0.67 0.869749
Target:  5'- cCCCCGccGccgccgcgcaaGGAGCGCGGGCcgcaGCGCCc -3'
miRNA:   3'- uGGGGCucC-----------UCUCGUGCUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 119429 0.67 0.869018
Target:  5'- gGCCCCGgcgguucGGGuGuGUACGuucGACgGCGCCg -3'
miRNA:   3'- -UGGGGC-------UCCuCuCGUGC---UUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 35046 0.67 0.862344
Target:  5'- uCCCCGAGGcaAGAG-GCGGACccucggagGCGCg -3'
miRNA:   3'- uGGGGCUCC--UCUCgUGCUUGa-------UGCGg -5'
5169 5' -56.6 NC_001798.1 + 28984 0.67 0.862344
Target:  5'- cGCCCCaGGGGGcGGCGCcGGCcaaccgcGCGCCg -3'
miRNA:   3'- -UGGGGcUCCUC-UCGUGcUUGa------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 129330 0.67 0.862344
Target:  5'- cGCCUgGAGGAcGGcCGCGGA--GCGCCc -3'
miRNA:   3'- -UGGGgCUCCUcUC-GUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 51155 0.67 0.857803
Target:  5'- cACCCCGGGucccgacgcgcguccGAG-GCcCGGGCggcgGCGCCc -3'
miRNA:   3'- -UGGGGCUC---------------CUCuCGuGCUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 134850 0.67 0.854736
Target:  5'- -gUCCGGGGAGGGCcCGuccaauACUuuGCCg -3'
miRNA:   3'- ugGGGCUCCUCUCGuGCu-----UGAugCGG- -5'
5169 5' -56.6 NC_001798.1 + 20910 0.67 0.854736
Target:  5'- aACCCgGGGGuggggaugggGGAGCAUGAuucGCagGCGUCg -3'
miRNA:   3'- -UGGGgCUCC----------UCUCGUGCU---UGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 27123 0.67 0.854736
Target:  5'- cCCCCGcAGGAGcgggagggaaGGCACGGG--GCGCg -3'
miRNA:   3'- uGGGGC-UCCUC----------UCGUGCUUgaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 27931 0.67 0.854736
Target:  5'- cGCCgCCGGGGucccGGCGCcGGCcGCGCCc -3'
miRNA:   3'- -UGG-GGCUCCuc--UCGUGcUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 44187 0.67 0.854736
Target:  5'- cGCCUCGuGGu--GCACGAACaGCGUg -3'
miRNA:   3'- -UGGGGCuCCucuCGUGCUUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 98265 0.67 0.854736
Target:  5'- --aCCGGugcGGGGAGCuuGAGUUGCGCCg -3'
miRNA:   3'- uggGGCU---CCUCUCGugCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 63476 0.67 0.853964
Target:  5'- cCCCCGAGGuAGuuguuguagauguAGCACGAgGCUGuCGUa -3'
miRNA:   3'- uGGGGCUCC-UC-------------UCGUGCU-UGAU-GCGg -5'
5169 5' -56.6 NC_001798.1 + 73120 0.67 0.853964
Target:  5'- gACUCCGuGGAccugucuccccagGGGCugGccGCUACGCUg -3'
miRNA:   3'- -UGGGGCuCCU-------------CUCGugCu-UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 97513 0.67 0.850076
Target:  5'- aGCCCCgggccgccgcgGAGGAGggggggcggaggcguGGCGCGGGg-ACGCCc -3'
miRNA:   3'- -UGGGG-----------CUCCUC---------------UCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 115494 0.67 0.846931
Target:  5'- gACCCCGucGAGGcCGCGAAUccguacggggcgUACGUCg -3'
miRNA:   3'- -UGGGGCucCUCUcGUGCUUG------------AUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 30368 0.67 0.846931
Target:  5'- cACCuCCGAGGcgGGcAGCACGGAC-ACGg- -3'
miRNA:   3'- -UGG-GGCUCC--UC-UCGUGCUUGaUGCgg -5'
5169 5' -56.6 NC_001798.1 + 26358 0.67 0.846931
Target:  5'- gGCCCgGcGGAGcuGCGCGGGCcGCGgCg -3'
miRNA:   3'- -UGGGgCuCCUCu-CGUGCUUGaUGCgG- -5'
5169 5' -56.6 NC_001798.1 + 126715 0.67 0.846931
Target:  5'- gACCCUGcucguGGGGGAGUGCGcuCUucGCGCg -3'
miRNA:   3'- -UGGGGC-----UCCUCUCGUGCuuGA--UGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.