miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 86433 0.66 0.883929
Target:  5'- gACCCCGAGGcGcAGCccGgGGACggGgGCCg -3'
miRNA:   3'- -UGGGGCUCCuC-UCG--UgCUUGa-UgCGG- -5'
5169 5' -56.6 NC_001798.1 + 97587 0.66 0.883929
Target:  5'- gGCCCCGAGccaGGGGCGCaggggccggaGAGCUGgGgCg -3'
miRNA:   3'- -UGGGGCUCc--UCUCGUG----------CUUGAUgCgG- -5'
5169 5' -56.6 NC_001798.1 + 106852 0.66 0.883929
Target:  5'- gGCCCUGGGGcc-GCGCGAcaauaucguCUACGUCc -3'
miRNA:   3'- -UGGGGCUCCucuCGUGCUu--------GAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 131558 0.66 0.883929
Target:  5'- cGCCCCGAcGGcccGGUGCGuAACUgugguccgcGCGCCa -3'
miRNA:   3'- -UGGGGCU-CCuc-UCGUGC-UUGA---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 147499 0.66 0.883929
Target:  5'- gGCUCCGGGGGGGGgGgGcgcCUGCGUg -3'
miRNA:   3'- -UGGGGCUCCUCUCgUgCuu-GAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 115951 0.66 0.883929
Target:  5'- aGCCgCGAuucacGGcaacGAGCACGuguuCUGCGCCc -3'
miRNA:   3'- -UGGgGCU-----CCu---CUCGUGCuu--GAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 15253 0.66 0.876946
Target:  5'- -gUCCGuuGGGGGGGUACGGGCggUGCCc -3'
miRNA:   3'- ugGGGC--UCCUCUCGUGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 29578 0.66 0.876946
Target:  5'- cGCCCCuuuGGGGGAGU--GGAUagGCGCCg -3'
miRNA:   3'- -UGGGGc--UCCUCUCGugCUUGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 24481 0.66 0.876946
Target:  5'- cGCCCUGGGGcgccuGAGCGCc-GCgccCGCCu -3'
miRNA:   3'- -UGGGGCUCCu----CUCGUGcuUGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 47017 0.66 0.876946
Target:  5'- -gCCCGGGGAGccGC-CGAACgcggcagGCGCa -3'
miRNA:   3'- ugGGGCUCCUCu-CGuGCUUGa------UGCGg -5'
5169 5' -56.6 NC_001798.1 + 80240 0.66 0.876946
Target:  5'- cCCCCGAcccGGGGccuccuguucGGCACGcGGCUggccgacugGCGCCg -3'
miRNA:   3'- uGGGGCU---CCUC----------UCGUGC-UUGA---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 134070 0.66 0.876946
Target:  5'- cGCCgCGGGGGaGGCGCGcGC-GCGCUu -3'
miRNA:   3'- -UGGgGCUCCUcUCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 91299 0.66 0.876236
Target:  5'- uCCCCGGGGguuguggGGGGCAaaaAACccagACGCCg -3'
miRNA:   3'- uGGGGCUCC-------UCUCGUgc-UUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 48375 0.67 0.870478
Target:  5'- cGCCCCGcGGGGcgugccgccgcgaccGCACGGGCcccCGCCc -3'
miRNA:   3'- -UGGGGCuCCUCu--------------CGUGCUUGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 45950 0.67 0.869749
Target:  5'- aACCCCucuGGGGuaGGCcCGGAaUGCGCCg -3'
miRNA:   3'- -UGGGGcu-CCUC--UCGuGCUUgAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 70581 0.67 0.869749
Target:  5'- gGCCCUGGGGccGGuGCGCGuc---CGCCa -3'
miRNA:   3'- -UGGGGCUCC--UCuCGUGCuugauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 70933 0.67 0.869749
Target:  5'- cCCCCGAucGGGGCGCGGugguccCGCCg -3'
miRNA:   3'- uGGGGCUccUCUCGUGCUugau--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 93999 0.67 0.869749
Target:  5'- gGCCCUGGGGAG-GCugGAgacgAUUAuCGgCa -3'
miRNA:   3'- -UGGGGCUCCUCuCGugCU----UGAU-GCgG- -5'
5169 5' -56.6 NC_001798.1 + 98524 0.67 0.869749
Target:  5'- gGCCCgccaugcgCGGGGGGGGCuuGAuUUGCGCg -3'
miRNA:   3'- -UGGG--------GCUCCUCUCGugCUuGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 32610 0.67 0.869749
Target:  5'- uCCCCGAGcac-GCGCGcAACUGCGUg -3'
miRNA:   3'- uGGGGCUCcucuCGUGC-UUGAUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.