miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 28117 0.72 0.600714
Target:  5'- uGCCCC-AGGcGGAcgacagcgacGaCGCGGACUACGCCg -3'
miRNA:   3'- -UGGGGcUCC-UCU----------C-GUGCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 28185 0.76 0.361785
Target:  5'- cCCCCGAGcGAGGGCGgGGGgaagGCGCCg -3'
miRNA:   3'- uGGGGCUC-CUCUCGUgCUUga--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 28248 0.67 0.869749
Target:  5'- cCCCCGccGccgccgcgcaaGGAGCGCGGGCcgcaGCGCCc -3'
miRNA:   3'- uGGGGCucC-----------UCUCGUGCUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 28621 0.66 0.903554
Target:  5'- -gCCCGAcGGGGGuccugggcGCGCGAGCgg-GCCg -3'
miRNA:   3'- ugGGGCU-CCUCU--------CGUGCUUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 28984 0.67 0.862344
Target:  5'- cGCCCCaGGGGGcGGCGCcGGCcaaccgcGCGCCg -3'
miRNA:   3'- -UGGGGcUCCUC-UCGUGcUUGa------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 29376 0.76 0.377788
Target:  5'- uCCCCGGGGGcGGGCACcacucaGGGCcGCGCCg -3'
miRNA:   3'- uGGGGCUCCU-CUCGUG------CUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 29578 0.66 0.876946
Target:  5'- cGCCCCuuuGGGGGAGU--GGAUagGCGCCg -3'
miRNA:   3'- -UGGGGc--UCCUCUCGugCUUGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 30368 0.67 0.846931
Target:  5'- cACCuCCGAGGcgGGcAGCACGGAC-ACGg- -3'
miRNA:   3'- -UGG-GGCUCC--UC-UCGUGCUUGaUGCgg -5'
5169 5' -56.6 NC_001798.1 + 31220 0.72 0.590644
Target:  5'- cGCCCCGcGGAGcAGCAgcAGCggcgGCGCCc -3'
miRNA:   3'- -UGGGGCuCCUC-UCGUgcUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 31539 0.7 0.708352
Target:  5'- gGCCCCGGGGGGGGaggucugccacaguCGuCGGGgcGCGCCg -3'
miRNA:   3'- -UGGGGCUCCUCUC--------------GU-GCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 31639 0.72 0.598698
Target:  5'- cCCCCGuGGugucugcGAGCGCGGACgcggccgggcccGCGCCg -3'
miRNA:   3'- uGGGGCuCCu------CUCGUGCUUGa-----------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 32273 0.66 0.903554
Target:  5'- gGCgCUGGGGAGAGaCGagaaaccucccuCGGcccccgcgcuGCUGCGCCg -3'
miRNA:   3'- -UGgGGCUCCUCUC-GU------------GCU----------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 32369 0.71 0.671424
Target:  5'- gGCCCCGAGcccGGGGCccGCGAcCcgGCGCCc -3'
miRNA:   3'- -UGGGGCUCc--UCUCG--UGCUuGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 32610 0.67 0.869749
Target:  5'- uCCCCGAGcac-GCGCGcAACUGCGUg -3'
miRNA:   3'- uGGGGCUCcucuCGUGC-UUGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 33378 0.69 0.768997
Target:  5'- gACCCUGGGGGugguGGGCAgGAGugggaggGCGCCu -3'
miRNA:   3'- -UGGGGCUCCU----CUCGUgCUUga-----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 35046 0.67 0.862344
Target:  5'- uCCCCGAGGcaAGAG-GCGGACccucggagGCGCg -3'
miRNA:   3'- uGGGGCUCC--UCUCgUGCUUGa-------UGCGg -5'
5169 5' -56.6 NC_001798.1 + 36271 0.7 0.711314
Target:  5'- gACCCCGGGGuGGGCGgCGGGggGgggUGCCg -3'
miRNA:   3'- -UGGGGCUCCuCUCGU-GCUUgaU---GCGG- -5'
5169 5' -56.6 NC_001798.1 + 36469 0.68 0.813876
Target:  5'- gACCCCGgaagcgccGGGAGGGgGCGccGGCgcgACGCg -3'
miRNA:   3'- -UGGGGC--------UCCUCUCgUGC--UUGa--UGCGg -5'
5169 5' -56.6 NC_001798.1 + 39271 0.66 0.909045
Target:  5'- cAUCCCGccaaAGGGGucuuGCAUGAccagggcACUGCGUCc -3'
miRNA:   3'- -UGGGGC----UCCUCu---CGUGCU-------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 39429 0.66 0.897237
Target:  5'- gGCCguCCGcgugcGGGGGGGuCAgGGACaGCGCCa -3'
miRNA:   3'- -UGG--GGC-----UCCUCUC-GUgCUUGaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.