miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 27482 0.66 0.903554
Target:  5'- uGCCgCgCGGGGGcGGGCGCGGgaaaaaagccgcGCggggGCGCCc -3'
miRNA:   3'- -UGG-G-GCUCCU-CUCGUGCU------------UGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 2596 0.66 0.903554
Target:  5'- gGCUCUucuucGGGGGGCGCGGG--GCGCCg -3'
miRNA:   3'- -UGGGGcu---CCUCUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 146681 0.66 0.896593
Target:  5'- cACUCCcacguugGGGGGGGGCGCGcAGCUGagUGCUc -3'
miRNA:   3'- -UGGGG-------CUCCUCUCGUGC-UUGAU--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 142322 0.66 0.897237
Target:  5'- uACCCaGAGGcuGGAGCGCuGGugggACGCCc -3'
miRNA:   3'- -UGGGgCUCC--UCUCGUG-CUuga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 39429 0.66 0.897237
Target:  5'- gGCCguCCGcgugcGGGGGGGuCAgGGACaGCGCCa -3'
miRNA:   3'- -UGG--GGC-----UCCUCUC-GUgCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 92247 0.66 0.897237
Target:  5'- cCUCCGGGGccgauGGGGUACGuguauGGCcGCGCCu -3'
miRNA:   3'- uGGGGCUCC-----UCUCGUGC-----UUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 95359 0.66 0.897237
Target:  5'- aGCUCCGGGGcaucauugcGGAGgGCGGggcgGCgguCGCCa -3'
miRNA:   3'- -UGGGGCUCC---------UCUCgUGCU----UGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 22396 0.66 0.897237
Target:  5'- aACCCCGGcGAGccggGGCGCG-GCgGCGUCg -3'
miRNA:   3'- -UGGGGCUcCUC----UCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 50088 0.66 0.897237
Target:  5'- cGCuCCUGcGGAG-GC-CGGGCUggugGCGCCg -3'
miRNA:   3'- -UG-GGGCuCCUCuCGuGCUUGA----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 71112 0.66 0.897237
Target:  5'- cCCCCGGGGAcgcugauggcgcGcGUGCGGACggACGCg -3'
miRNA:   3'- uGGGGCUCCU------------CuCGUGCUUGa-UGCGg -5'
5169 5' -56.6 NC_001798.1 + 121077 0.66 0.897237
Target:  5'- gGCCCCGAGGA---CGCGcAC-ACGCa -3'
miRNA:   3'- -UGGGGCUCCUcucGUGCuUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 90640 0.66 0.897237
Target:  5'- cGCCUCGAagugguccgcGGAGAuGcCGCGGAacgACGCCc -3'
miRNA:   3'- -UGGGGCU----------CCUCU-C-GUGCUUga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133595 0.66 0.899791
Target:  5'- uUCCCGGGGcGGGGCGCGuuaaaaaccucaccaAGCga-GCCa -3'
miRNA:   3'- uGGGGCUCC-UCUCGUGC---------------UUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 45950 0.67 0.869749
Target:  5'- aACCCCucuGGGGuaGGCcCGGAaUGCGCCg -3'
miRNA:   3'- -UGGGGcu-CCUC--UCGuGCUUgAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 70581 0.67 0.869749
Target:  5'- gGCCCUGGGGccGGuGCGCGuc---CGCCa -3'
miRNA:   3'- -UGGGGCUCC--UCuCGUGCuugauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 70933 0.67 0.869749
Target:  5'- cCCCCGAucGGGGCGCGGugguccCGCCg -3'
miRNA:   3'- uGGGGCUccUCUCGUGCUugau--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 93999 0.67 0.869749
Target:  5'- gGCCCUGGGGAG-GCugGAgacgAUUAuCGgCa -3'
miRNA:   3'- -UGGGGCUCCUCuCGugCU----UGAU-GCgG- -5'
5169 5' -56.6 NC_001798.1 + 98524 0.67 0.869749
Target:  5'- gGCCCgccaugcgCGGGGGGGGCuuGAuUUGCGCg -3'
miRNA:   3'- -UGGG--------GCUCCUCUCGugCUuGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 28248 0.67 0.869749
Target:  5'- cCCCCGccGccgccgcgcaaGGAGCGCGGGCcgcaGCGCCc -3'
miRNA:   3'- uGGGGCucC-----------UCUCGUGCUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 32610 0.67 0.869749
Target:  5'- uCCCCGAGcac-GCGCGcAACUGCGUg -3'
miRNA:   3'- uGGGGCUCcucuCGUGC-UUGAUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.