miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 71503 0.71 0.620914
Target:  5'- gGCUCgCGcGG-GAGUACGGgcACUACGCCg -3'
miRNA:   3'- -UGGG-GCuCCuCUCGUGCU--UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 93084 0.71 0.620914
Target:  5'- aGCCCC-AGcGGGGCGCGcGCgACGCCg -3'
miRNA:   3'- -UGGGGcUCcUCUCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 89414 0.71 0.620914
Target:  5'- cCCCCGAGGcacGGC-CGGGCgcuuggGCGCCu -3'
miRNA:   3'- uGGGGCUCCuc-UCGuGCUUGa-----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 135489 0.71 0.627994
Target:  5'- gACCCCGGGGAcGcggacgccgcgcacGGCGCGAuccaggACGCCc -3'
miRNA:   3'- -UGGGGCUCCU-C--------------UCGUGCUuga---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3196 0.71 0.63103
Target:  5'- gGCCCCggccggcgcgGAGGcGGGCGCGGcGCUcagGCGCCc -3'
miRNA:   3'- -UGGGG----------CUCCuCUCGUGCU-UGA---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16189 0.71 0.651256
Target:  5'- --aCCGGGGGGAcGCACGGGC--CGCCc -3'
miRNA:   3'- uggGGCUCCUCU-CGUGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 97837 0.71 0.655297
Target:  5'- cGCCCUGAcGGcGGGCGCGGgcacggucaucgacaACcGCGCCg -3'
miRNA:   3'- -UGGGGCU-CCuCUCGUGCU---------------UGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 9645 0.71 0.661352
Target:  5'- cGCCCCGAGGc--GCAgCGGGCcGCGCg -3'
miRNA:   3'- -UGGGGCUCCucuCGU-GCUUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 21941 0.71 0.661352
Target:  5'- gGCCCCGcccccuuuGGGcGGAGCGCGGGaugACGCg -3'
miRNA:   3'- -UGGGGC--------UCC-UCUCGUGCUUga-UGCGg -5'
5169 5' -56.6 NC_001798.1 + 99407 0.71 0.664376
Target:  5'- uCCCCGuuuuacggcuaccGGGAGGGguCGcacaccgagcacaccAGCUACGCCg -3'
miRNA:   3'- uGGGGC-------------UCCUCUCguGC---------------UUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 145780 0.71 0.671424
Target:  5'- cACCCCGGGGuccacacaGGAGCGCGcgggcggcagaAACgcggGCGCg -3'
miRNA:   3'- -UGGGGCUCC--------UCUCGUGC-----------UUGa---UGCGg -5'
5169 5' -56.6 NC_001798.1 + 32369 0.71 0.671424
Target:  5'- gGCCCCGAGcccGGGGCccGCGAcCcgGCGCCc -3'
miRNA:   3'- -UGGGGCUCc--UCUCG--UGCUuGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 93470 0.7 0.680462
Target:  5'- gACCgCGAGGGccacguggugcccGGGUACGAGggGCGCCc -3'
miRNA:   3'- -UGGgGCUCCU-------------CUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 124070 0.7 0.681464
Target:  5'- gACCCCccggGAGGAGgcGGCGC---CUGCGCCc -3'
miRNA:   3'- -UGGGG----CUCCUC--UCGUGcuuGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3002 0.7 0.681464
Target:  5'- gGCCCCGGGcgcGGGGGCGCG-GCgg-GCCg -3'
miRNA:   3'- -UGGGGCUC---CUCUCGUGCuUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 61839 0.7 0.681464
Target:  5'- cGCCCCGGGGgaccGGGGaaCGCGGGC--CGCCg -3'
miRNA:   3'- -UGGGGCUCC----UCUC--GUGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 111621 0.7 0.691465
Target:  5'- aGCCCCGGGGGcGGCA--GACUcGCGUCg -3'
miRNA:   3'- -UGGGGCUCCUcUCGUgcUUGA-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133204 0.7 0.691465
Target:  5'- aACgCCGccGGAGAGCugGAGCUugugGCCc -3'
miRNA:   3'- -UGgGGCu-CCUCUCGugCUUGAug--CGG- -5'
5169 5' -56.6 NC_001798.1 + 23573 0.7 0.700426
Target:  5'- gGCCCCGGGGGcGGCGCcccggccGAGCc-CGCCc -3'
miRNA:   3'- -UGGGGCUCCUcUCGUG-------CUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 72515 0.7 0.701418
Target:  5'- cGCCCCGAGGccauGGGCgacGCGGugagccaguACUGCGgCa -3'
miRNA:   3'- -UGGGGCUCCu---CUCG---UGCU---------UGAUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.