miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 95003 0.74 0.455416
Target:  5'- gGCCCCGcAGGGcGGCGCGGGCcuggAgGCCg -3'
miRNA:   3'- -UGGGGC-UCCUcUCGUGCUUGa---UgCGG- -5'
5169 5' -56.6 NC_001798.1 + 85035 0.74 0.464567
Target:  5'- cGCCCCG-GGGGuGCcguCGAGCgcCGCCg -3'
miRNA:   3'- -UGGGGCuCCUCuCGu--GCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3563 0.74 0.48315
Target:  5'- uACCCC-AGGuGGGGCACGGcCcGCGCCa -3'
miRNA:   3'- -UGGGGcUCC-UCUCGUGCUuGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 97052 0.74 0.491629
Target:  5'- cGCCCUGcuGGAGGcGCAUGAcguguuucaggccACUACGCCc -3'
miRNA:   3'- -UGGGGCu-CCUCU-CGUGCU-------------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 135219 0.74 0.492575
Target:  5'- gGCCUCGGGGAG-GC-CGGGCUGCcggaaGCCc -3'
miRNA:   3'- -UGGGGCUCCUCuCGuGCUUGAUG-----CGG- -5'
5169 5' -56.6 NC_001798.1 + 141076 0.73 0.51071
Target:  5'- gGCCgCCuAGGGGAGCugACGGcagaacuccugucGCUACGCCg -3'
miRNA:   3'- -UGG-GGcUCCUCUCG--UGCU-------------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 27216 0.73 0.511672
Target:  5'- cCCCCGGGGcGGGGCGCGGGggagGCgGCCg -3'
miRNA:   3'- uGGGGCUCC-UCUCGUGCUUga--UG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 4630 0.73 0.521336
Target:  5'- cGCUCCGGGGGGGGCgacgggaucguGCGAACg--GCCu -3'
miRNA:   3'- -UGGGGCUCCUCUCG-----------UGCUUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 101977 0.73 0.531069
Target:  5'- gGCCCCGGGGGG---GCGAugUGCGgCg -3'
miRNA:   3'- -UGGGGCUCCUCucgUGCUugAUGCgG- -5'
5169 5' -56.6 NC_001798.1 + 86490 0.73 0.537922
Target:  5'- gGCCCCGAGGccaucuucaAGCAcauguucugcgaucCGAugUGCGCCa -3'
miRNA:   3'- -UGGGGCUCCuc-------UCGU--------------GCUugAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 118300 0.72 0.560639
Target:  5'- cCCCCcAGGGGGGCuuGGACUGggaGCCg -3'
miRNA:   3'- uGGGGcUCCUCUCGugCUUGAUg--CGG- -5'
5169 5' -56.6 NC_001798.1 + 59542 0.72 0.570601
Target:  5'- gACCCCggaaggcgGAGaGGGGGCugGGGCUcGCGUCg -3'
miRNA:   3'- -UGGGG--------CUC-CUCUCGugCUUGA-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 62313 0.72 0.580604
Target:  5'- cGCUCCcuGGAGAGCAUGc-CUACGCUg -3'
miRNA:   3'- -UGGGGcuCCUCUCGUGCuuGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 80546 0.72 0.580604
Target:  5'- gGCCCgGcGGGGGGGCGCGAG--GCGUCc -3'
miRNA:   3'- -UGGGgC-UCCUCUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 109638 0.72 0.580604
Target:  5'- cGCCCCGAuGGuccgccGAGCGCuGuuUUACGCCa -3'
miRNA:   3'- -UGGGGCU-CCu-----CUCGUG-CuuGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 31220 0.72 0.590644
Target:  5'- cGCCCCGcGGAGcAGCAgcAGCggcgGCGCCc -3'
miRNA:   3'- -UGGGGCuCCUC-UCGUgcUUGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 31639 0.72 0.598698
Target:  5'- cCCCCGuGGugucugcGAGCGCGGACgcggccgggcccGCGCCg -3'
miRNA:   3'- uGGGGCuCCu------CUCGUGCUUGa-----------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 28117 0.72 0.600714
Target:  5'- uGCCCC-AGGcGGAcgacagcgacGaCGCGGACUACGCCg -3'
miRNA:   3'- -UGGGGcUCC-UCU----------C-GUGCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 93084 0.71 0.620914
Target:  5'- aGCCCC-AGcGGGGCGCGcGCgACGCCg -3'
miRNA:   3'- -UGGGGcUCcUCUCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 71503 0.71 0.620914
Target:  5'- gGCUCgCGcGG-GAGUACGGgcACUACGCCg -3'
miRNA:   3'- -UGGG-GCuCCuCUCGUGCU--UGAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.