miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 109138 1.1 0.002347
Target:  5'- uACCCCGAGGAGAGCACGAACUACGCCc -3'
miRNA:   3'- -UGGGGCUCCUCUCGUGCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 52634 0.8 0.222796
Target:  5'- cCCCCGAGGuGGGCACGuacacccccCUGCGCUa -3'
miRNA:   3'- uGGGGCUCCuCUCGUGCuu-------GAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 78991 0.79 0.245247
Target:  5'- cCCCCGAGGGGuuccgcgccauGCACGAgcaGCUGCGCg -3'
miRNA:   3'- uGGGGCUCCUCu----------CGUGCU---UGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 79468 0.78 0.275913
Target:  5'- cCCCCGAGGGccacGAGguCGAcccgcagcuGCUGCGCCg -3'
miRNA:   3'- uGGGGCUCCU----CUCguGCU---------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133345 0.78 0.275913
Target:  5'- aGCCCCGAGGAcGuGCugGAGCUGCu-- -3'
miRNA:   3'- -UGGGGCUCCU-CuCGugCUUGAUGcgg -5'
5169 5' -56.6 NC_001798.1 + 97425 0.78 0.289011
Target:  5'- aGCCCCGAGcAGuGCgACGAggaggcGCUGCGCCg -3'
miRNA:   3'- -UGGGGCUCcUCuCG-UGCU------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 100348 0.77 0.331218
Target:  5'- gGCCCgcugauCGAGGGGcAGCugggcgagaacaACGAGCUGCGCCu -3'
miRNA:   3'- -UGGG------GCUCCUC-UCG------------UGCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 107459 0.77 0.338678
Target:  5'- gACCCCGAGGAcGGCGCGGGgucuCUGCcCCg -3'
miRNA:   3'- -UGGGGCUCCUcUCGUGCUU----GAUGcGG- -5'
5169 5' -56.6 NC_001798.1 + 28185 0.76 0.361785
Target:  5'- cCCCCGAGcGAGGGCGgGGGgaagGCGCCg -3'
miRNA:   3'- uGGGGCUC-CUCUCGUgCUUga--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 52336 0.76 0.372938
Target:  5'- aGCCCCGGGGucguggcggccGAGCACGAggcGCUgggcgacaccgcggcGCGCCg -3'
miRNA:   3'- -UGGGGCUCCu----------CUCGUGCU---UGA---------------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 29376 0.76 0.377788
Target:  5'- uCCCCGGGGGcGGGCACcacucaGGGCcGCGCCg -3'
miRNA:   3'- uGGGGCUCCU-CUCGUG------CUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 72329 0.76 0.385966
Target:  5'- -gCCCGGGGGGugcuGCAgGAGCU-CGCCg -3'
miRNA:   3'- ugGGGCUCCUCu---CGUgCUUGAuGCGG- -5'
5169 5' -56.6 NC_001798.1 + 103274 0.76 0.385966
Target:  5'- cUCCCG-GGAGAGCGCGggUccgcgGCGCUc -3'
miRNA:   3'- uGGGGCuCCUCUCGUGCuuGa----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 43021 0.76 0.39426
Target:  5'- -gCCCGGGGGGAGCGCgGGGCcccggGCGCa -3'
miRNA:   3'- ugGGGCUCCUCUCGUG-CUUGa----UGCGg -5'
5169 5' -56.6 NC_001798.1 + 5905 0.75 0.41119
Target:  5'- cGCCCCGAGGcGGGCcCGGACgggggGCggGCCg -3'
miRNA:   3'- -UGGGGCUCCuCUCGuGCUUGa----UG--CGG- -5'
5169 5' -56.6 NC_001798.1 + 109372 0.75 0.428564
Target:  5'- -gCCCGGGGAGca-GCGGGCUGCGCg -3'
miRNA:   3'- ugGGGCUCCUCucgUGCUUGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 132903 0.75 0.428564
Target:  5'- uGCCCUGAGGgcccagcgGGAucuGCGgGAGCUGCGCUg -3'
miRNA:   3'- -UGGGGCUCC--------UCU---CGUgCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16943 0.75 0.437411
Target:  5'- cCCCCGGGGGGAGCGgGGucACUugGgUg -3'
miRNA:   3'- uGGGGCUCCUCUCGUgCU--UGAugCgG- -5'
5169 5' -56.6 NC_001798.1 + 147906 0.75 0.437411
Target:  5'- uUCCCGGGGGGgcaGGCGCGggUcgggcccgUACGCCc -3'
miRNA:   3'- uGGGGCUCCUC---UCGUGCuuG--------AUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 132185 0.74 0.452689
Target:  5'- cCCCCGGacgccaccuucuucGGGGAGCugGAGgcGCGCCu -3'
miRNA:   3'- uGGGGCU--------------CCUCUCGugCUUgaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.