miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 2091 0.68 0.822401
Target:  5'- cACUCCGGGGGGGGCcCGcccccgGCGCg -3'
miRNA:   3'- -UGGGGCUCCUCUCGuGCuuga--UGCGg -5'
5169 5' -56.6 NC_001798.1 + 2596 0.66 0.903554
Target:  5'- gGCUCUucuucGGGGGGCGCGGG--GCGCCg -3'
miRNA:   3'- -UGGGGcu---CCUCUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3002 0.7 0.681464
Target:  5'- gGCCCCGGGcgcGGGGGCGCG-GCgg-GCCg -3'
miRNA:   3'- -UGGGGCUC---CUCUCGUGCuUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 3196 0.71 0.63103
Target:  5'- gGCCCCggccggcgcgGAGGcGGGCGCGGcGCUcagGCGCCc -3'
miRNA:   3'- -UGGGG----------CUCCuCUCGUGCU-UGA---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3563 0.74 0.48315
Target:  5'- uACCCC-AGGuGGGGCACGGcCcGCGCCa -3'
miRNA:   3'- -UGGGGcUCC-UCUCGUGCUuGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 4215 0.69 0.778246
Target:  5'- gGCgCUGGcGGGGGCGCGGGCgGCGUCg -3'
miRNA:   3'- -UGgGGCUcCUCUCGUGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 4630 0.73 0.521336
Target:  5'- cGCUCCGGGGGGGGCgacgggaucguGCGAACg--GCCu -3'
miRNA:   3'- -UGGGGCUCCUCUCG-----------UGCUUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 5905 0.75 0.41119
Target:  5'- cGCCCCGAGGcGGGCcCGGACgggggGCggGCCg -3'
miRNA:   3'- -UGGGGCUCCuCUCGuGCUUGa----UG--CGG- -5'
5169 5' -56.6 NC_001798.1 + 9127 0.68 0.79635
Target:  5'- cGCCgCGAGGuGgucugcGGCACGcgGGCgcgGCGCCg -3'
miRNA:   3'- -UGGgGCUCCuC------UCGUGC--UUGa--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 9645 0.71 0.661352
Target:  5'- cGCCCCGAGGc--GCAgCGGGCcGCGCg -3'
miRNA:   3'- -UGGGGCUCCucuCGU-GCUUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 11741 0.69 0.73768
Target:  5'- uACgCUCGAGGGucccaGGCGCGGggccgaaaagggaaGCUGCGCCg -3'
miRNA:   3'- -UG-GGGCUCCUc----UCGUGCU--------------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 15253 0.66 0.876946
Target:  5'- -gUCCGuuGGGGGGGUACGGGCggUGCCc -3'
miRNA:   3'- ugGGGC--UCCUCUCGUGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16189 0.71 0.651256
Target:  5'- --aCCGGGGGGAcGCACGGGC--CGCCc -3'
miRNA:   3'- uggGGCUCCUCU-CGUGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16585 0.66 0.890027
Target:  5'- aGCCCCcccguGAGGAacgagcggcccagGGGCucgugACGGACgacGCGCCg -3'
miRNA:   3'- -UGGGG-----CUCCU-------------CUCG-----UGCUUGa--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16943 0.75 0.437411
Target:  5'- cCCCCGGGGGGAGCGgGGucACUugGgUg -3'
miRNA:   3'- uGGGGCUCCUCUCGUgCU--UGAugCgG- -5'
5169 5' -56.6 NC_001798.1 + 20499 0.68 0.813876
Target:  5'- uCCCCGGaagacuGGccGGGGcCugGggUUGCGCCg -3'
miRNA:   3'- uGGGGCU------CC--UCUC-GugCuuGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 20759 0.68 0.822401
Target:  5'- cCCCCGAgcucccgcGGGGAGCgACG-GCgccCGCCg -3'
miRNA:   3'- uGGGGCU--------CCUCUCG-UGCuUGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 20910 0.67 0.854736
Target:  5'- aACCCgGGGGuggggaugggGGAGCAUGAuucGCagGCGUCg -3'
miRNA:   3'- -UGGGgCUCC----------UCUCGUGCU---UGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 21810 0.69 0.750151
Target:  5'- cGCCUCGGGGcGGAGCccgcgggaugacGCGGGCcccgggcaggGCGCCa -3'
miRNA:   3'- -UGGGGCUCC-UCUCG------------UGCUUGa---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 21941 0.71 0.661352
Target:  5'- gGCCCCGcccccuuuGGGcGGAGCGCGGGaugACGCg -3'
miRNA:   3'- -UGGGGC--------UCC-UCUCGUGCUUga-UGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.