miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 154046 0.68 0.813876
Target:  5'- cGCgCCGGGGcGcGGCACG-GCUggaGCGCCg -3'
miRNA:   3'- -UGgGGCUCCuC-UCGUGCuUGA---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 153068 0.69 0.7309
Target:  5'- cCCCUGGGGcGGGCG-GAGCggcggggcgGCGCCg -3'
miRNA:   3'- uGGGGCUCCuCUCGUgCUUGa--------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 152803 0.7 0.701418
Target:  5'- aACCCCGAGG-GAGUA---AUUACGCg -3'
miRNA:   3'- -UGGGGCUCCuCUCGUgcuUGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 150081 0.67 0.838935
Target:  5'- cCCCUGGGGGGcgaGGgGCGAGCgcgggGCGgCg -3'
miRNA:   3'- uGGGGCUCCUC---UCgUGCUUGa----UGCgG- -5'
5169 5' -56.6 NC_001798.1 + 149971 0.7 0.721145
Target:  5'- gACgCCGAcGGGGGCGCGGcgcccGCggACGCCg -3'
miRNA:   3'- -UGgGGCUcCUCUCGUGCU-----UGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 149241 0.69 0.7309
Target:  5'- gGCCCgCGGGGGcGucgccggccGGCGCGGGC-GCGCCc -3'
miRNA:   3'- -UGGG-GCUCCU-C---------UCGUGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 148505 0.68 0.79635
Target:  5'- uCCCCGGGGgcAGAGgGCGuGCaUGCGUUg -3'
miRNA:   3'- uGGGGCUCC--UCUCgUGCuUG-AUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 147906 0.75 0.437411
Target:  5'- uUCCCGGGGGGgcaGGCGCGggUcgggcccgUACGCCc -3'
miRNA:   3'- uGGGGCUCCUC---UCGUGCuuG--------AUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 147499 0.66 0.883929
Target:  5'- gGCUCCGGGGGGGGgGgGcgcCUGCGUg -3'
miRNA:   3'- -UGGGGCUCCUCUCgUgCuu-GAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 147223 0.68 0.790977
Target:  5'- cCCCCGGcGGAGcGCGggggccccggggcccCGGGCcGCGCCg -3'
miRNA:   3'- uGGGGCU-CCUCuCGU---------------GCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 147006 0.71 0.620914
Target:  5'- uGCCUCGGGGAcccccGGGCGggccgGGGCUugGCCg -3'
miRNA:   3'- -UGGGGCUCCU-----CUCGUg----CUUGAugCGG- -5'
5169 5' -56.6 NC_001798.1 + 146753 0.66 0.903554
Target:  5'- aGCCgCC--GGAGAGCcCGAGCccCGCCc -3'
miRNA:   3'- -UGG-GGcuCCUCUCGuGCUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 146681 0.66 0.896593
Target:  5'- cACUCCcacguugGGGGGGGGCGCGcAGCUGagUGCUc -3'
miRNA:   3'- -UGGGG-------CUCCUCUCGUGC-UUGAU--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 146483 0.68 0.830756
Target:  5'- gGCUCCGGGGccGGGC-CGGGCcggcaACGCCc -3'
miRNA:   3'- -UGGGGCUCCu-CUCGuGCUUGa----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 146444 0.67 0.838935
Target:  5'- aGCCCCc-GGAGcccgcggccgcAGC-CGAGCaGCGCCg -3'
miRNA:   3'- -UGGGGcuCCUC-----------UCGuGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 145780 0.71 0.671424
Target:  5'- cACCCCGGGGuccacacaGGAGCGCGcgggcggcagaAACgcggGCGCg -3'
miRNA:   3'- -UGGGGCUCC--------UCUCGUGC-----------UUGa---UGCGg -5'
5169 5' -56.6 NC_001798.1 + 145386 0.66 0.890694
Target:  5'- -aCCCGAGGGGcGaCGCGGggaaaGC-GCGCCc -3'
miRNA:   3'- ugGGGCUCCUCuC-GUGCU-----UGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 142489 0.68 0.829929
Target:  5'- cCCCCGAGGcggcgcgGGGGUGCGAua-ACGCa -3'
miRNA:   3'- uGGGGCUCC-------UCUCGUGCUugaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 142322 0.66 0.897237
Target:  5'- uACCCaGAGGcuGGAGCGCuGGugggACGCCc -3'
miRNA:   3'- -UGGGgCUCC--UCUCGUG-CUuga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 141913 0.68 0.79635
Target:  5'- cGCUCCG-GGAGcGcCACGAACgcgaugACGUCa -3'
miRNA:   3'- -UGGGGCuCCUCuC-GUGCUUGa-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.