miRNA display CGI


Results 21 - 40 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 141076 0.73 0.51071
Target:  5'- gGCCgCCuAGGGGAGCugACGGcagaacuccugucGCUACGCCg -3'
miRNA:   3'- -UGG-GGcUCCUCUCG--UGCU-------------UGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 138161 0.7 0.711314
Target:  5'- cCCCCGGGuccuGGGGGCGCGAcCcGCgGCCg -3'
miRNA:   3'- uGGGGCUC----CUCUCGUGCUuGaUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 137632 0.68 0.813876
Target:  5'- cGCgCCCGcucGGGGGGCGCGAAgcACGUa -3'
miRNA:   3'- -UG-GGGCu--CCUCUCGUGCUUgaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 136660 0.66 0.890694
Target:  5'- gGCCgaGAGGAcgGGGgGCGGAUugUugGCCa -3'
miRNA:   3'- -UGGggCUCCU--CUCgUGCUUG--AugCGG- -5'
5169 5' -56.6 NC_001798.1 + 135489 0.71 0.627994
Target:  5'- gACCCCGGGGAcGcggacgccgcgcacGGCGCGAuccaggACGCCc -3'
miRNA:   3'- -UGGGGCUCCU-C--------------UCGUGCUuga---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 135219 0.74 0.492575
Target:  5'- gGCCUCGGGGAG-GC-CGGGCUGCcggaaGCCc -3'
miRNA:   3'- -UGGGGCUCCUCuCGuGCUUGAUG-----CGG- -5'
5169 5' -56.6 NC_001798.1 + 134850 0.67 0.854736
Target:  5'- -gUCCGGGGAGGGCcCGuccaauACUuuGCCg -3'
miRNA:   3'- ugGGGCUCCUCUCGuGCu-----UGAugCGG- -5'
5169 5' -56.6 NC_001798.1 + 134660 0.67 0.844552
Target:  5'- gGCCCCGcggacacccgcagcGGGucacGGCGCGGguGCUGCuGCCg -3'
miRNA:   3'- -UGGGGC--------------UCCuc--UCGUGCU--UGAUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 134461 0.66 0.890694
Target:  5'- cACCCCGGcgcgcGGuuGGCGUGGGC-GCGCCu -3'
miRNA:   3'- -UGGGGCU-----CCucUCGUGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 134070 0.66 0.876946
Target:  5'- cGCCgCGGGGGaGGCGCGcGC-GCGCUu -3'
miRNA:   3'- -UGGgGCUCCUcUCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 133595 0.66 0.899791
Target:  5'- uUCCCGGGGcGGGGCGCGuuaaaaaccucaccaAGCga-GCCa -3'
miRNA:   3'- uGGGGCUCC-UCUCGUGC---------------UUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 133492 0.68 0.819861
Target:  5'- cCCCCGcgcGGGuccgugagcgagacGGAGCACGcGCUGuCGCUg -3'
miRNA:   3'- uGGGGC---UCC--------------UCUCGUGCuUGAU-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 133345 0.78 0.275913
Target:  5'- aGCCCCGAGGAcGuGCugGAGCUGCu-- -3'
miRNA:   3'- -UGGGGCUCCU-CuCGugCUUGAUGcgg -5'
5169 5' -56.6 NC_001798.1 + 133204 0.7 0.691465
Target:  5'- aACgCCGccGGAGAGCugGAGCUugugGCCc -3'
miRNA:   3'- -UGgGGCu-CCUCUCGugCUUGAug--CGG- -5'
5169 5' -56.6 NC_001798.1 + 132903 0.75 0.428564
Target:  5'- uGCCCUGAGGgcccagcgGGAucuGCGgGAGCUGCGCUg -3'
miRNA:   3'- -UGGGGCUCC--------UCU---CGUgCUUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 132185 0.74 0.452689
Target:  5'- cCCCCGGacgccaccuucuucGGGGAGCugGAGgcGCGCCu -3'
miRNA:   3'- uGGGGCU--------------CCUCUCGugCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 132141 0.68 0.822401
Target:  5'- uGCgCCGccGGGGGCcgGCGGGCgggGCGCCc -3'
miRNA:   3'- -UGgGGCucCUCUCG--UGCUUGa--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 131558 0.66 0.883929
Target:  5'- cGCCCCGAcGGcccGGUGCGuAACUgugguccgcGCGCCa -3'
miRNA:   3'- -UGGGGCU-CCuc-UCGUGC-UUGA---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 130542 0.68 0.813876
Target:  5'- gGCCCCGAGGugGGGGCccACcAAC-ACGCg -3'
miRNA:   3'- -UGGGGCUCC--UCUCG--UGcUUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 129330 0.67 0.862344
Target:  5'- cGCCUgGAGGAcGGcCGCGGA--GCGCCc -3'
miRNA:   3'- -UGGGgCUCCUcUC-GUGCUUgaUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.