miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 21978 0.7 0.701418
Target:  5'- gGCCCCGGGcAGGGCGCcAGCgcuCGCa -3'
miRNA:   3'- -UGGGGCUCcUCUCGUGcUUGau-GCGg -5'
5169 5' -56.6 NC_001798.1 + 22396 0.66 0.897237
Target:  5'- aACCCCGGcGAGccggGGCGCG-GCgGCGUCg -3'
miRNA:   3'- -UGGGGCUcCUC----UCGUGCuUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 23573 0.7 0.700426
Target:  5'- gGCCCCGGGGGcGGCGCcccggccGAGCc-CGCCc -3'
miRNA:   3'- -UGGGGCUCCUcUCGUG-------CUUGauGCGG- -5'
5169 5' -56.6 NC_001798.1 + 23722 0.69 0.749198
Target:  5'- gGCCCCGGcGGGucGAGCugGAcgccgacGCggccuccgGCGCCu -3'
miRNA:   3'- -UGGGGCU-CCU--CUCGugCU-------UGa-------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 23868 0.66 0.909644
Target:  5'- cGCCCCGGccucuGGGGGGCGCccgaGGCggaggagGCGCg -3'
miRNA:   3'- -UGGGGCU-----CCUCUCGUGc---UUGa------UGCGg -5'
5169 5' -56.6 NC_001798.1 + 24049 0.66 0.883929
Target:  5'- gGCgCCCGGGGAcguGGCGCuGGACcAgGCCu -3'
miRNA:   3'- -UG-GGGCUCCUc--UCGUG-CUUGaUgCGG- -5'
5169 5' -56.6 NC_001798.1 + 24481 0.66 0.876946
Target:  5'- cGCCCUGGGGcgccuGAGCGCc-GCgccCGCCu -3'
miRNA:   3'- -UGGGGCUCCu----CUCGUGcuUGau-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 24711 0.68 0.813876
Target:  5'- cGCgCCCGGGGcccgcGGGCGCGGccgccccgccGC-ACGCCg -3'
miRNA:   3'- -UG-GGGCUCCu----CUCGUGCU----------UGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 25077 0.69 0.7309
Target:  5'- cGCCCCGGccAGGGCGCcgccGGGCgGCGCCc -3'
miRNA:   3'- -UGGGGCUccUCUCGUG----CUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 25540 0.67 0.837314
Target:  5'- gACCCgGAGGAcGuGCGCGuggugauccucuACU-CGCCg -3'
miRNA:   3'- -UGGGgCUCCU-CuCGUGCu-----------UGAuGCGG- -5'
5169 5' -56.6 NC_001798.1 + 26204 0.68 0.80519
Target:  5'- gGCCgCCGccucGGGCGCGGGCgACGCCa -3'
miRNA:   3'- -UGG-GGCuccuCUCGUGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 26290 0.66 0.903554
Target:  5'- cGCgCUGGGGccuGGGCGCGccGCUGCgGCCc -3'
miRNA:   3'- -UGgGGCUCCu--CUCGUGCu-UGAUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 26358 0.67 0.846931
Target:  5'- gGCCCgGcGGAGcuGCGCGGGCcGCGgCg -3'
miRNA:   3'- -UGGGgCuCCUCu-CGUGCUUGaUGCgG- -5'
5169 5' -56.6 NC_001798.1 + 27123 0.67 0.854736
Target:  5'- cCCCCGcAGGAGcgggagggaaGGCACGGG--GCGCg -3'
miRNA:   3'- uGGGGC-UCCUC----------UCGUGCUUgaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 27216 0.73 0.511672
Target:  5'- cCCCCGGGGcGGGGCGCGGGggagGCgGCCg -3'
miRNA:   3'- uGGGGCUCC-UCUCGUGCUUga--UG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 27271 0.66 0.883929
Target:  5'- aGCCCCGuggcgcgcggggGGGAGGGgcugcCGCGAGCU-CGgCg -3'
miRNA:   3'- -UGGGGC------------UCCUCUC-----GUGCUUGAuGCgG- -5'
5169 5' -56.6 NC_001798.1 + 27482 0.66 0.903554
Target:  5'- uGCCgCgCGGGGGcGGGCGCGGgaaaaaagccgcGCggggGCGCCc -3'
miRNA:   3'- -UGG-G-GCUCCU-CUCGUGCU------------UGa---UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 27586 0.7 0.708352
Target:  5'- gGCUCCGGGGgagggacggggaagGGGGCGCGcggGGCUGCccuGCCg -3'
miRNA:   3'- -UGGGGCUCC--------------UCUCGUGC---UUGAUG---CGG- -5'
5169 5' -56.6 NC_001798.1 + 27698 0.66 0.909644
Target:  5'- uCCCCGGGGgaaaagaggcGGGGCGgGAGuccccgucCUGcCGCCg -3'
miRNA:   3'- uGGGGCUCC----------UCUCGUgCUU--------GAU-GCGG- -5'
5169 5' -56.6 NC_001798.1 + 27931 0.67 0.854736
Target:  5'- cGCCgCCGGGGucccGGCGCcGGCcGCGCCc -3'
miRNA:   3'- -UGG-GGCUCCuc--UCGUGcUUGaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.