miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 50088 0.66 0.897237
Target:  5'- cGCuCCUGcGGAG-GC-CGGGCUggugGCGCCg -3'
miRNA:   3'- -UG-GGGCuCCUCuCGuGCUUGA----UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 71112 0.66 0.897237
Target:  5'- cCCCCGGGGAcgcugauggcgcGcGUGCGGACggACGCg -3'
miRNA:   3'- uGGGGCUCCU------------CuCGUGCUUGa-UGCGg -5'
5169 5' -56.6 NC_001798.1 + 121077 0.66 0.897237
Target:  5'- gGCCCCGAGGA---CGCGcAC-ACGCa -3'
miRNA:   3'- -UGGGGCUCCUcucGUGCuUGaUGCGg -5'
5169 5' -56.6 NC_001798.1 + 90640 0.66 0.897237
Target:  5'- cGCCUCGAagugguccgcGGAGAuGcCGCGGAacgACGCCc -3'
miRNA:   3'- -UGGGGCU----------CCUCU-C-GUGCUUga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 146681 0.66 0.896593
Target:  5'- cACUCCcacguugGGGGGGGGCGCGcAGCUGagUGCUc -3'
miRNA:   3'- -UGGGG-------CUCCUCUCGUGC-UUGAU--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 73712 0.66 0.895298
Target:  5'- gGCCCCGcucguGGcGGGCGCGGcacacaugauuccgGCcGCGCUa -3'
miRNA:   3'- -UGGGGCu----CCuCUCGUGCU--------------UGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 92430 0.66 0.890694
Target:  5'- gGCCuuGGGGGGAcCGCGGugUcccucaagcuuAUGCCc -3'
miRNA:   3'- -UGGggCUCCUCUcGUGCUugA-----------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 39504 0.66 0.890694
Target:  5'- gGCCCCc-GGAGAcGU-CGAGCUgcuccccuccGCGCCg -3'
miRNA:   3'- -UGGGGcuCCUCU-CGuGCUUGA----------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 124495 0.66 0.890694
Target:  5'- cCCCCGccauggcgggGGGGGGGCuGCGGGCguguCGUCc -3'
miRNA:   3'- uGGGGC----------UCCUCUCG-UGCUUGau--GCGG- -5'
5169 5' -56.6 NC_001798.1 + 134461 0.66 0.890694
Target:  5'- cACCCCGGcgcgcGGuuGGCGUGGGC-GCGCCu -3'
miRNA:   3'- -UGGGGCU-----CCucUCGUGCUUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 136660 0.66 0.890694
Target:  5'- gGCCgaGAGGAcgGGGgGCGGAUugUugGCCa -3'
miRNA:   3'- -UGGggCUCCU--CUCgUGCUUG--AugCGG- -5'
5169 5' -56.6 NC_001798.1 + 145386 0.66 0.890694
Target:  5'- -aCCCGAGGGGcGaCGCGGggaaaGC-GCGCCc -3'
miRNA:   3'- ugGGGCUCCUCuC-GUGCU-----UGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 16585 0.66 0.890027
Target:  5'- aGCCCCcccguGAGGAacgagcggcccagGGGCucgugACGGACgacGCGCCg -3'
miRNA:   3'- -UGGGG-----CUCCU-------------CUCG-----UGCUUGa--UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 52038 0.66 0.890027
Target:  5'- -gCCCGGGGugcgcgcgcuccuGGGGCGCG-ACUGuCGCg -3'
miRNA:   3'- ugGGGCUCC-------------UCUCGUGCuUGAU-GCGg -5'
5169 5' -56.6 NC_001798.1 + 88030 0.66 0.886661
Target:  5'- cGCUuggCCGGGGAGGGCagggccgcuggggggGCGGGCU-CGUCc -3'
miRNA:   3'- -UGG---GGCUCCUCUCG---------------UGCUUGAuGCGG- -5'
5169 5' -56.6 NC_001798.1 + 97587 0.66 0.883929
Target:  5'- gGCCCCGAGccaGGGGCGCaggggccggaGAGCUGgGgCg -3'
miRNA:   3'- -UGGGGCUCc--UCUCGUG----------CUUGAUgCgG- -5'
5169 5' -56.6 NC_001798.1 + 106852 0.66 0.883929
Target:  5'- gGCCCUGGGGcc-GCGCGAcaauaucguCUACGUCc -3'
miRNA:   3'- -UGGGGCUCCucuCGUGCUu--------GAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 131558 0.66 0.883929
Target:  5'- cGCCCCGAcGGcccGGUGCGuAACUgugguccgcGCGCCa -3'
miRNA:   3'- -UGGGGCU-CCuc-UCGUGC-UUGA---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 147499 0.66 0.883929
Target:  5'- gGCUCCGGGGGGGGgGgGcgcCUGCGUg -3'
miRNA:   3'- -UGGGGCUCCUCUCgUgCuu-GAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 86433 0.66 0.883929
Target:  5'- gACCCCGAGGcGcAGCccGgGGACggGgGCCg -3'
miRNA:   3'- -UGGGGCUCCuC-UCG--UgCUUGa-UgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.