miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 25970 0.68 0.826441
Target:  5'- gGCGGCgcgggaccuGCGCcGCACCGUgCUGGccuCCGg -3'
miRNA:   3'- aUGUUG---------UGCGuCGUGGCA-GACCu--GGC- -5'
5173 3' -55.6 NC_001798.1 + 28797 0.66 0.907753
Target:  5'- gGCGGCGCGCGGguccucCGCCGcCgcgGGcCCGg -3'
miRNA:   3'- aUGUUGUGCGUC------GUGGCaGa--CCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 31741 0.74 0.520413
Target:  5'- -cCGACACccaAGCACagaGUCUGGGCCGg -3'
miRNA:   3'- auGUUGUGcg-UCGUGg--CAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 34579 0.66 0.901475
Target:  5'- gACGGCucACGCGGCGCggCGUCUcggugGGACgCGg -3'
miRNA:   3'- aUGUUG--UGCGUCGUG--GCAGA-----CCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 34950 0.73 0.560432
Target:  5'- cGCgAACGCGCGGCGCCGgagGGGgCGg -3'
miRNA:   3'- aUG-UUGUGCGUCGUGGCagaCCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 37156 0.67 0.851145
Target:  5'- cGCu-CGCGCcGCGCCGcCUGGcggGCCGc -3'
miRNA:   3'- aUGuuGUGCGuCGUGGCaGACC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 37208 0.7 0.733764
Target:  5'- aACGACggGCGCGGCGCCGgagcUUUGGcCCa -3'
miRNA:   3'- aUGUUG--UGCGUCGUGGC----AGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 39086 0.68 0.823879
Target:  5'- cGCAGCACGCAGUcgcgcauggccuugGCUGUCgacgcGGcCCGc -3'
miRNA:   3'- aUGUUGUGCGUCG--------------UGGCAGa----CCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 40234 0.74 0.520413
Target:  5'- gGCAGCACaCAGCGCCcagUGGGCCGg -3'
miRNA:   3'- aUGUUGUGcGUCGUGGcagACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 42295 0.8 0.252887
Target:  5'- gGCcGCACGCGGaGCCGUCgGGGCCGa -3'
miRNA:   3'- aUGuUGUGCGUCgUGGCAGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 46231 0.67 0.888214
Target:  5'- gUAUGAC-CGUGGCGCCGUUggccgGGACgGu -3'
miRNA:   3'- -AUGUUGuGCGUCGUGGCAGa----CCUGgC- -5'
5173 3' -55.6 NC_001798.1 + 46372 0.67 0.876945
Target:  5'- cGCc-CGCGUAgaccagcgaucccccGCGCCGUCUGG-CCGg -3'
miRNA:   3'- aUGuuGUGCGU---------------CGUGGCAGACCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 51495 0.67 0.858986
Target:  5'- aGCuGCAgGCGGCAuuCCccCUGGACCGc -3'
miRNA:   3'- aUGuUGUgCGUCGU--GGcaGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 52521 0.66 0.907753
Target:  5'- gGCGGC-CGCGcGCGCCGUgCUGGcgaCGg -3'
miRNA:   3'- aUGUUGuGCGU-CGUGGCA-GACCug-GC- -5'
5173 3' -55.6 NC_001798.1 + 54715 0.68 0.817838
Target:  5'- cUACGACGCGguGCGgacCUGg--GGGCCGg -3'
miRNA:   3'- -AUGUUGUGCguCGU---GGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 56097 0.67 0.866619
Target:  5'- aGCc-CACGCGGCgugcGCCGUUcGGAUCGg -3'
miRNA:   3'- aUGuuGUGCGUCG----UGGCAGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 66804 0.67 0.866619
Target:  5'- gAC-GCGCGCGGguCCGUCgcGGAgcCCGg -3'
miRNA:   3'- aUGuUGUGCGUCguGGCAGa-CCU--GGC- -5'
5173 3' -55.6 NC_001798.1 + 70028 0.67 0.874039
Target:  5'- gGCGGCG-GCAGUcauucCCGUUUGGGCCc -3'
miRNA:   3'- aUGUUGUgCGUCGu----GGCAGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 72808 0.69 0.762929
Target:  5'- gGCGcGCugGCGGCGCC-UCUcGGCCGg -3'
miRNA:   3'- aUGU-UGugCGUCGUGGcAGAcCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 73318 0.69 0.760056
Target:  5'- cAgGACACGCAggcccgcGCGCCGUCgacgcgcccggcGGGCCGc -3'
miRNA:   3'- aUgUUGUGCGU-------CGUGGCAGa-----------CCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.