miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 1279 0.66 0.919591
Target:  5'- cGCAGCAC-CAGCgggggcgcgucGCCGUC-GGGCuCGa -3'
miRNA:   3'- aUGUUGUGcGUCG-----------UGGCAGaCCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 1342 0.7 0.743587
Target:  5'- cGCGGCccGCGCAGCuCCG-CcGGGCCGc -3'
miRNA:   3'- aUGUUG--UGCGUCGuGGCaGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 1597 0.67 0.888214
Target:  5'- cGCGugcGCACGCGGUACCGcacgUUGGcCCc -3'
miRNA:   3'- aUGU---UGUGCGUCGUGGCa---GACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 1776 0.67 0.866619
Target:  5'- cACGGCGgGCAGCACC-UCgcaGGCCa -3'
miRNA:   3'- aUGUUGUgCGUCGUGGcAGac-CUGGc -5'
5173 3' -55.6 NC_001798.1 + 1954 0.67 0.881239
Target:  5'- aGCAGCACGCccugcgcgcccAGCGCCGagacgUCggGGGCgCGg -3'
miRNA:   3'- aUGUUGUGCG-----------UCGUGGC-----AGa-CCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 2281 0.66 0.907136
Target:  5'- cGCAGCGCGCGGCcagcgagGCCagcgcgcgcggGUCgaacaugaGGGCCGg -3'
miRNA:   3'- aUGUUGUGCGUCG-------UGG-----------CAGa-------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 2408 0.66 0.907753
Target:  5'- gGCGGC-CGagGGCGCCGgcguguggCUGGGCCc -3'
miRNA:   3'- aUGUUGuGCg-UCGUGGCa-------GACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 2442 0.73 0.529328
Target:  5'- gGCGGCugGCGGCGCCagccgcccugcggGUCgGGGCCc -3'
miRNA:   3'- aUGUUGugCGUCGUGG-------------CAGaCCUGGc -5'
5173 3' -55.6 NC_001798.1 + 3877 0.71 0.64244
Target:  5'- gUACAGCACGC-GCcCCGggggCgggGGGCCGg -3'
miRNA:   3'- -AUGUUGUGCGuCGuGGCa---Ga--CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 4070 0.68 0.826441
Target:  5'- gGCGGCcCGCGGuCGCCGcgggggUCcGGGCCGg -3'
miRNA:   3'- aUGUUGuGCGUC-GUGGC------AGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 6017 0.67 0.881239
Target:  5'- gGCAGCG-GCGGCAUCG-CgaaggGGGCCa -3'
miRNA:   3'- aUGUUGUgCGUCGUGGCaGa----CCUGGc -5'
5173 3' -55.6 NC_001798.1 + 7619 0.74 0.510578
Target:  5'- -cCAACuCGCGGCACCGcgcGGACCGg -3'
miRNA:   3'- auGUUGuGCGUCGUGGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 8824 0.66 0.894961
Target:  5'- -cCGACGCGCuggaacGCACCGagUCUuggucggcGGGCCGg -3'
miRNA:   3'- auGUUGUGCGu-----CGUGGC--AGA--------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 9141 0.67 0.888214
Target:  5'- cUGCGGCACGCgggcgcGGCGCCGcCcGcGCCGg -3'
miRNA:   3'- -AUGUUGUGCG------UCGUGGCaGaCcUGGC- -5'
5173 3' -55.6 NC_001798.1 + 10649 0.67 0.888214
Target:  5'- cACGAC-CGUcucgAGCAcCCGUCggggGGGCCa -3'
miRNA:   3'- aUGUUGuGCG----UCGU-GGCAGa---CCUGGc -5'
5173 3' -55.6 NC_001798.1 + 12724 0.68 0.826441
Target:  5'- gGCGugGUGCGGCGCgaCGUCcUGGAUCGa -3'
miRNA:   3'- aUGUugUGCGUCGUG--GCAG-ACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 18200 0.67 0.888214
Target:  5'- gACAcagGCGCGCAGCcucGCCGgg-GGACgGu -3'
miRNA:   3'- aUGU---UGUGCGUCG---UGGCagaCCUGgC- -5'
5173 3' -55.6 NC_001798.1 + 22728 0.75 0.472067
Target:  5'- gACGACgACGCAGgGCCG-CgGGGCCGa -3'
miRNA:   3'- aUGUUG-UGCGUCgUGGCaGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 23639 0.67 0.888214
Target:  5'- gGCGAC-CGCGG-GCCGcCUGGAgCGc -3'
miRNA:   3'- aUGUUGuGCGUCgUGGCaGACCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 24659 0.69 0.800127
Target:  5'- gGCGAcCugGCGGCcguGCCGgggCUGG-CCGg -3'
miRNA:   3'- aUGUU-GugCGUCG---UGGCa--GACCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.