miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 106942 1.06 0.004603
Target:  5'- cUACAACACGCAGCACCGUCUGGACCGc -3'
miRNA:   3'- -AUGUUGUGCGUCGUGGCAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 143819 0.8 0.246845
Target:  5'- gGCGGCGCGCGGCcaGCCG-UUGGACCa -3'
miRNA:   3'- aUGUUGUGCGUCG--UGGCaGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 42295 0.8 0.252887
Target:  5'- gGCcGCACGCGGaGCCGUCgGGGCCGa -3'
miRNA:   3'- aUGuUGUGCGUCgUGGCAGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 80262 0.75 0.462668
Target:  5'- -uCGGCACGCGGCugGCCGaCUGGcGCCGg -3'
miRNA:   3'- auGUUGUGCGUCG--UGGCaGACC-UGGC- -5'
5173 3' -55.6 NC_001798.1 + 22728 0.75 0.472067
Target:  5'- gACGACgACGCAGgGCCG-CgGGGCCGa -3'
miRNA:   3'- aUGUUG-UGCGUCgUGGCaGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 144166 0.74 0.491148
Target:  5'- cGCGGCG-GCAGCACCucuucgGUCUGGcACCGa -3'
miRNA:   3'- aUGUUGUgCGUCGUGG------CAGACC-UGGC- -5'
5173 3' -55.6 NC_001798.1 + 91271 0.74 0.49985
Target:  5'- gGCAAgGCgGCGGUGCCGUCUGGGuggcuccCCGg -3'
miRNA:   3'- aUGUUgUG-CGUCGUGGCAGACCU-------GGC- -5'
5173 3' -55.6 NC_001798.1 + 116285 0.74 0.500821
Target:  5'- aUGCGACACGCGGC-CC---UGGACCGc -3'
miRNA:   3'- -AUGUUGUGCGUCGuGGcagACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 7619 0.74 0.510578
Target:  5'- -cCAACuCGCGGCACCGcgcGGACCGg -3'
miRNA:   3'- auGUUGuGCGUCGUGGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 40234 0.74 0.520413
Target:  5'- gGCAGCACaCAGCGCCcagUGGGCCGg -3'
miRNA:   3'- aUGUUGUGcGUCGUGGcagACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 31741 0.74 0.520413
Target:  5'- -cCGACACccaAGCACagaGUCUGGGCCGg -3'
miRNA:   3'- auGUUGUGcg-UCGUGg--CAGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 2442 0.73 0.529328
Target:  5'- gGCGGCugGCGGCGCCagccgcccugcggGUCgGGGCCc -3'
miRNA:   3'- aUGUUGugCGUCGUGG-------------CAGaCCUGGc -5'
5173 3' -55.6 NC_001798.1 + 149482 0.73 0.534304
Target:  5'- cGCGGCcCGCAGCAgguccgccacguuccCCGUCUGGuCCa -3'
miRNA:   3'- aUGUUGuGCGUCGU---------------GGCAGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 34950 0.73 0.560432
Target:  5'- cGCgAACGCGCGGCGCCGgagGGGgCGg -3'
miRNA:   3'- aUG-UUGUGCGUCGUGGCagaCCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 146463 0.72 0.601253
Target:  5'- cGCAGCcgaGCAGCGCCGcgggcUCcgGGGCCGg -3'
miRNA:   3'- aUGUUGug-CGUCGUGGC-----AGa-CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 100399 0.71 0.64244
Target:  5'- cGCGACGCGCucgagccguGCACCGU--GGGCCa -3'
miRNA:   3'- aUGUUGUGCGu--------CGUGGCAgaCCUGGc -5'
5173 3' -55.6 NC_001798.1 + 104455 0.71 0.64244
Target:  5'- gGCGgucGCcCGCAGCAgCGUCUGGuCCu -3'
miRNA:   3'- aUGU---UGuGCGUCGUgGCAGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 3877 0.71 0.64244
Target:  5'- gUACAGCACGC-GCcCCGggggCgggGGGCCGg -3'
miRNA:   3'- -AUGUUGUGCGuCGuGGCa---Ga--CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 93268 0.71 0.663015
Target:  5'- cGCGGCccGCGcCGGCGCCGUCgGGGCg- -3'
miRNA:   3'- aUGUUG--UGC-GUCGUGGCAGaCCUGgc -5'
5173 3' -55.6 NC_001798.1 + 94980 0.71 0.68349
Target:  5'- aGCGuGCAgGCGGCgGCCGcCUGGGCCc -3'
miRNA:   3'- aUGU-UGUgCGUCG-UGGCaGACCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.