miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 27240 0.69 0.330738
Target:  5'- -gCGGCCgcgGGGGAGGCGGCcGcGGg-- -3'
miRNA:   3'- uaGCCGG---CCCCUCCGCCGcCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 27308 0.66 0.495386
Target:  5'- cUCGGCgggauggaGGGGAGGgaGGgGGUGGc-- -3'
miRNA:   3'- uAGCCGg-------CCCCUCCg-CCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 29903 0.66 0.468183
Target:  5'- --gGGuuGGGGGuGGUcgcgGGCGGUGGg-- -3'
miRNA:   3'- uagCCggCCCCU-CCG----CCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 30945 0.71 0.230704
Target:  5'- gGUCGGgCGGGG-GGCgGGCGGgGGUc- -3'
miRNA:   3'- -UAGCCgGCCCCuCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 30978 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 31011 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 31044 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 31145 0.66 0.459287
Target:  5'- -cCGGCgCGGG--GGCGGCGGUGcGg-- -3'
miRNA:   3'- uaGCCG-GCCCcuCCGCCGCCAC-Cauu -5'
5173 5' -64.7 NC_001798.1 + 31335 0.68 0.367163
Target:  5'- -gCGGCCGGcGGGGggcgcgcgcaggcGCGGCgGGUGGg-- -3'
miRNA:   3'- uaGCCGGCC-CCUC-------------CGCCG-CCACCauu -5'
5173 5' -64.7 NC_001798.1 + 34629 0.66 0.486237
Target:  5'- -gCGGCgGGGGGGGgGGgGGgaaauGUGAg -3'
miRNA:   3'- uaGCCGgCCCCUCCgCCgCCac---CAUU- -5'
5173 5' -64.7 NC_001798.1 + 36028 0.77 0.098135
Target:  5'- cUUGGCUguuuggGGGGuGGCGGCGGUGGUc- -3'
miRNA:   3'- uAGCCGG------CCCCuCCGCCGCCACCAuu -5'
5173 5' -64.7 NC_001798.1 + 36079 0.67 0.450481
Target:  5'- --gGGCgCGGGGuAGGUgggugGGCGgGUGGUGGg -3'
miRNA:   3'- uagCCG-GCCCC-UCCG-----CCGC-CACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 36144 0.68 0.352717
Target:  5'- -cCGGUgGGGcGcGGCGGCGGUcggGGUGGg -3'
miRNA:   3'- uaGCCGgCCC-CuCCGCCGCCA---CCAUU- -5'
5173 5' -64.7 NC_001798.1 + 36268 0.7 0.283442
Target:  5'- -gUGGaccCCGGGGuGGGCGGCGGgggggGGUGc -3'
miRNA:   3'- uaGCC---GGCCCC-UCCGCCGCCa----CCAUu -5'
5173 5' -64.7 NC_001798.1 + 36414 0.67 0.441768
Target:  5'- -cCuGCCGGGcGGGGCGGUGG-GGc-- -3'
miRNA:   3'- uaGcCGGCCC-CUCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36438 0.69 0.330738
Target:  5'- --gGGUCGGGGucGCGGCGG-GGa-- -3'
miRNA:   3'- uagCCGGCCCCucCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36509 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36551 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36593 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36832 0.67 0.407903
Target:  5'- gGUCGGCgUGGGGAccGGCuGuGUGGUGGg-- -3'
miRNA:   3'- -UAGCCG-GCCCCU--CCG-C-CGCCACCauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.