miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 3312 0.69 0.316655
Target:  5'- -aCGGCaaCGGGGcGGCGGCGGcGGc-- -3'
miRNA:   3'- uaGCCG--GCCCCuCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 4362 0.81 0.050378
Target:  5'- -cCGGCgGGGGGcgcgccGGCGGCGGUGGUGGu -3'
miRNA:   3'- uaGCCGgCCCCU------CCGCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 6234 0.71 0.24166
Target:  5'- -cCGGCCGGGGggacGGGCGGgGGacgGGg-- -3'
miRNA:   3'- uaGCCGGCCCC----UCCGCCgCCa--CCauu -5'
5173 5' -64.7 NC_001798.1 + 6371 0.66 0.504614
Target:  5'- --gGGCCGGGGGGcCGGgGGgccgGGg-- -3'
miRNA:   3'- uagCCGGCCCCUCcGCCgCCa---CCauu -5'
5173 5' -64.7 NC_001798.1 + 6403 0.66 0.486237
Target:  5'- --gGGCCGGGGGGaCGGgGGgacgGGg-- -3'
miRNA:   3'- uagCCGGCCCCUCcGCCgCCa---CCauu -5'
5173 5' -64.7 NC_001798.1 + 12342 0.67 0.424634
Target:  5'- gAUCGGaCGGGucGAGGUGGCuGUGGg-- -3'
miRNA:   3'- -UAGCCgGCCC--CUCCGCCGcCACCauu -5'
5173 5' -64.7 NC_001798.1 + 12694 0.67 0.424634
Target:  5'- gAUCaGGcCCGGguugcuGGGGGCGGCGGgggcgUGGUGc -3'
miRNA:   3'- -UAG-CC-GGCC------CCUCCGCCGCC-----ACCAUu -5'
5173 5' -64.7 NC_001798.1 + 15372 0.68 0.367934
Target:  5'- aAUCGGCCGuGGGc-GCGGCGGaGGc-- -3'
miRNA:   3'- -UAGCCGGC-CCCucCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 16218 0.66 0.486237
Target:  5'- -aCGcGCCgccuguGGGGGGGCGGUGGggccgGGg-- -3'
miRNA:   3'- uaGC-CGG------CCCCUCCGCCGCCa----CCauu -5'
5173 5' -64.7 NC_001798.1 + 19766 0.68 0.391591
Target:  5'- -gUGGCCgcagggauaGGGGcAGGCGGCGG-GGa-- -3'
miRNA:   3'- uaGCCGG---------CCCC-UCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 23535 0.67 0.449605
Target:  5'- cUCGGCgCGGacgacgaGGAGGCGGgGGUGc--- -3'
miRNA:   3'- uAGCCG-GCC-------CCUCCGCCgCCACcauu -5'
5173 5' -64.7 NC_001798.1 + 24518 0.67 0.410387
Target:  5'- -cCGGCCGGGGccgacgacgacgacgAcgacgacGGCgccGGCGGUGGUGg -3'
miRNA:   3'- uaGCCGGCCCC---------------U-------CCG---CCGCCACCAUu -5'
5173 5' -64.7 NC_001798.1 + 24570 0.66 0.468183
Target:  5'- -gCGGCCGGcgcgcGGAGGCGGgcCGcGUGGc-- -3'
miRNA:   3'- uaGCCGGCC-----CCUCCGCC--GC-CACCauu -5'
5173 5' -64.7 NC_001798.1 + 26517 0.69 0.309785
Target:  5'- -cUGGCCGcGGcGGGCGGCGGcguggaggUGGUGGg -3'
miRNA:   3'- uaGCCGGC-CCcUCCGCCGCC--------ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 26817 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26847 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26877 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26931 0.68 0.391591
Target:  5'- gGUCGGgCGGGcGGGGUcgGGCGGgcgGGg-- -3'
miRNA:   3'- -UAGCCgGCCC-CUCCG--CCGCCa--CCauu -5'
5173 5' -64.7 NC_001798.1 + 26966 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26996 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.