miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 106977 1.03 0.001117
Target:  5'- uAUCGGCCGGGGAGGCGGCGGUGGUAAu -3'
miRNA:   3'- -UAGCCGGCCCCUCCGCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 4362 0.81 0.050378
Target:  5'- -cCGGCgGGGGGcgcgccGGCGGCGGUGGUGGu -3'
miRNA:   3'- uaGCCGgCCCCU------CCGCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 36028 0.77 0.098135
Target:  5'- cUUGGCUguuuggGGGGuGGCGGCGGUGGUc- -3'
miRNA:   3'- uAGCCGG------CCCCuCCGCCGCCACCAuu -5'
5173 5' -64.7 NC_001798.1 + 148039 0.76 0.119979
Target:  5'- cGUgGGCgCGGGcGGGGgGGUGGUGGUAGu -3'
miRNA:   3'- -UAgCCG-GCCC-CUCCgCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 122831 0.74 0.146278
Target:  5'- -gCGGUCGGGGGcGGCGGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCCCCU-CCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 55978 0.73 0.186487
Target:  5'- -cCGcGCCGGGGAGGCcGCGGgggcgaggggcUGGUAGg -3'
miRNA:   3'- uaGC-CGGCCCCUCCGcCGCC-----------ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 71383 0.72 0.225384
Target:  5'- uAUCGGCCcuggaGGGGuuuuuGGUGGCGGgGGUGc -3'
miRNA:   3'- -UAGCCGG-----CCCCu----CCGCCGCCaCCAUu -5'
5173 5' -64.7 NC_001798.1 + 30945 0.71 0.230704
Target:  5'- gGUCGGgCGGGG-GGCgGGCGGgGGUc- -3'
miRNA:   3'- -UAGCCgGCCCCuCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 102037 0.71 0.238329
Target:  5'- gGUUGGgCGGGGGucuccgugucugcguGGgGGUGGUGGUAGg -3'
miRNA:   3'- -UAGCCgGCCCCU---------------CCgCCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 6234 0.71 0.24166
Target:  5'- -cCGGCCGGGGggacGGGCGGgGGacgGGg-- -3'
miRNA:   3'- uaGCCGGCCCC----UCCGCCgCCa--CCauu -5'
5173 5' -64.7 NC_001798.1 + 31011 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 30978 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 31044 0.71 0.2473
Target:  5'- gGUCGGgCGGGGgucGGGCGGgGGUcGGg-- -3'
miRNA:   3'- -UAGCCgGCCCC---UCCGCCgCCA-CCauu -5'
5173 5' -64.7 NC_001798.1 + 96676 0.71 0.249586
Target:  5'- -aCGGCCGcgcuggagcgcguccGGGAguuuaugguGGCGGCGGUGGg-- -3'
miRNA:   3'- uaGCCGGC---------------CCCU---------CCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 110319 0.7 0.264872
Target:  5'- -cCGGCCGGGGAGGUcaugucGGUgcugcuGGUGGa-- -3'
miRNA:   3'- uaGCCGGCCCCUCCG------CCG------CCACCauu -5'
5173 5' -64.7 NC_001798.1 + 145832 0.7 0.264872
Target:  5'- -gCGGUCGGGGugGGaGUGGUGGUGGg-- -3'
miRNA:   3'- uaGCCGGCCCC--UC-CGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 36268 0.7 0.283442
Target:  5'- -gUGGaccCCGGGGuGGGCGGCGGgggggGGUGc -3'
miRNA:   3'- uaGCC---GGCCCC-UCCGCCGCCa----CCAUu -5'
5173 5' -64.7 NC_001798.1 + 69190 0.7 0.283442
Target:  5'- --aGGUgGGGGAGGuCGGUGG-GGUGc -3'
miRNA:   3'- uagCCGgCCCCUCC-GCCGCCaCCAUu -5'
5173 5' -64.7 NC_001798.1 + 56181 0.7 0.289858
Target:  5'- -aCGG-CGGGGGGGUGG-GGUGGg-- -3'
miRNA:   3'- uaGCCgGCCCCUCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 67705 0.7 0.289858
Target:  5'- --gGGcCCGuGGGAGGCGG-GGUGGg-- -3'
miRNA:   3'- uagCC-GGC-CCCUCCGCCgCCACCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.