miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5175 3' -62.3 NC_001798.1 + 105705 1.08 0.001082
Target:  5'- gACGGGGGCGACAGCGGUCGACACCCAg -3'
miRNA:   3'- -UGCCCCCGCUGUCGCCAGCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 33504 0.83 0.06147
Target:  5'- gGCGGGGGCGAgGGCGGUUGAaucacaacgcaugcaCGCCCu -3'
miRNA:   3'- -UGCCCCCGCUgUCGCCAGCU---------------GUGGGu -5'
5175 3' -62.3 NC_001798.1 + 122835 0.82 0.07468
Target:  5'- uCGGGGGCGGCGGCGG-CGGCucguCCCu -3'
miRNA:   3'- uGCCCCCGCUGUCGCCaGCUGu---GGGu -5'
5175 3' -62.3 NC_001798.1 + 69 0.77 0.146549
Target:  5'- gGCGGGcGGCGGCGGCGGgcgggCGGCAgggcagcCCCGc -3'
miRNA:   3'- -UGCCC-CCGCUGUCGCCa----GCUGU-------GGGU- -5'
5175 3' -62.3 NC_001798.1 + 154407 0.77 0.146549
Target:  5'- gGCGGGcGGCGGCGGCGGgcgggCGGCAgggcagcCCCGc -3'
miRNA:   3'- -UGCCC-CCGCUGUCGCCa----GCUGU-------GGGU- -5'
5175 3' -62.3 NC_001798.1 + 31149 0.77 0.148354
Target:  5'- cGCGGGGGCGGCGguGCGGgggCGACccgcggaaccucccaGCCCGc -3'
miRNA:   3'- -UGCCCCCGCUGU--CGCCa--GCUG---------------UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 150417 0.77 0.150546
Target:  5'- cACGGGGGCGGCGGCGGcgCGGgGCg-- -3'
miRNA:   3'- -UGCCCCCGCUGUCGCCa-GCUgUGggu -5'
5175 3' -62.3 NC_001798.1 + 12718 0.77 0.165924
Target:  5'- gGCGGGGGCGugGuGCGGcgCGACGuCCUg -3'
miRNA:   3'- -UGCCCCCGCugU-CGCCa-GCUGU-GGGu -5'
5175 3' -62.3 NC_001798.1 + 36041 0.75 0.200955
Target:  5'- -gGGGuGGCGGCGGUGGUCGgcguGCugCCGg -3'
miRNA:   3'- ugCCC-CCGCUGUCGCCAGC----UGugGGU- -5'
5175 3' -62.3 NC_001798.1 + 36600 0.74 0.237266
Target:  5'- gGCGGGGGCGcGCGGCGGccgggcgggggcgcgCGGCGgCCGg -3'
miRNA:   3'- -UGCCCCCGC-UGUCGCCa--------------GCUGUgGGU- -5'
5175 3' -62.3 NC_001798.1 + 36558 0.74 0.237266
Target:  5'- gGCGGGGGCGcGCGGCGGccgggcgggggcgcgCGGCGgCCGg -3'
miRNA:   3'- -UGCCCCCGC-UGUCGCCa--------------GCUGUgGGU- -5'
5175 3' -62.3 NC_001798.1 + 36516 0.74 0.237266
Target:  5'- gGCGGGGGCGcGCGGCGGccgggcgggggcgcgCGGCGgCCGg -3'
miRNA:   3'- -UGCCCCCGC-UGUCGCCa--------------GCUGUgGGU- -5'
5175 3' -62.3 NC_001798.1 + 24557 0.74 0.247874
Target:  5'- gGCGGuGGUGGCGGCGGcCGGCGCgCGg -3'
miRNA:   3'- -UGCCcCCGCUGUCGCCaGCUGUGgGU- -5'
5175 3' -62.3 NC_001798.1 + 136002 0.74 0.247874
Target:  5'- cCGGGGGCgGGgAGuCGGUCGGCGuCCCc -3'
miRNA:   3'- uGCCCCCG-CUgUC-GCCAGCUGU-GGGu -5'
5175 3' -62.3 NC_001798.1 + 95693 0.74 0.253613
Target:  5'- gGCGGGGGCGGC--CGG-CGuCGCCCGa -3'
miRNA:   3'- -UGCCCCCGCUGucGCCaGCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 3011 0.73 0.25946
Target:  5'- cGCGGGGGCG-CGGCGGgccgggcucCGGCcaGCCCc -3'
miRNA:   3'- -UGCCCCCGCuGUCGCCa--------GCUG--UGGGu -5'
5175 3' -62.3 NC_001798.1 + 19780 0.73 0.264817
Target:  5'- --aGGGGCaGGCGGCGGggaagcgcauuuuUCGGCACCCGu -3'
miRNA:   3'- ugcCCCCG-CUGUCGCC-------------AGCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 31049 0.73 0.277664
Target:  5'- gGCGGGGGUcgGGCGGgGGUCgGGCACUa- -3'
miRNA:   3'- -UGCCCCCG--CUGUCgCCAG-CUGUGGgu -5'
5175 3' -62.3 NC_001798.1 + 23577 0.73 0.277664
Target:  5'- cCGGGGGCGGCGcccCGGcCGAgccCGCCCAg -3'
miRNA:   3'- uGCCCCCGCUGUc--GCCaGCU---GUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 81282 0.73 0.277664
Target:  5'- -gGGGGGgGAUGGCGGaUCGGguCCCGa -3'
miRNA:   3'- ugCCCCCgCUGUCGCC-AGCUguGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.