miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5175 3' -62.3 NC_001798.1 + 69 0.77 0.146549
Target:  5'- gGCGGGcGGCGGCGGCGGgcgggCGGCAgggcagcCCCGc -3'
miRNA:   3'- -UGCCC-CCGCUGUCGCCa----GCUGU-------GGGU- -5'
5175 3' -62.3 NC_001798.1 + 1288 0.67 0.561031
Target:  5'- aGCGGGGGCG-CGucGCcGUCGggcucgagcaGCGCCCGc -3'
miRNA:   3'- -UGCCCCCGCuGU--CGcCAGC----------UGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 1395 0.66 0.648453
Target:  5'- cACGuagacGGGCcGCAGCGG-CG-CGCCCAg -3'
miRNA:   3'- -UGCc----CCCGcUGUCGCCaGCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 2504 0.69 0.480735
Target:  5'- cGCGGGGcgcggcggccGCGGCGGCGGcgUCGGCggggcggggggcgcgGCCCc -3'
miRNA:   3'- -UGCCCC----------CGCUGUCGCC--AGCUG---------------UGGGu -5'
5175 3' -62.3 NC_001798.1 + 2607 0.68 0.551465
Target:  5'- -gGGGGGCG-CGGggcgccgccCGG-CGGCGCCCu -3'
miRNA:   3'- ugCCCCCGCuGUC---------GCCaGCUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 2765 0.71 0.360598
Target:  5'- cGCGGcGGCGGCGGCGG-CGGaGCUCAg -3'
miRNA:   3'- -UGCCcCCGCUGUCGCCaGCUgUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 2962 0.72 0.316404
Target:  5'- gGCGGGGcGCGucggcguGCGGCGGggCGGCcgGCCCGc -3'
miRNA:   3'- -UGCCCC-CGC-------UGUCGCCa-GCUG--UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 3011 0.73 0.25946
Target:  5'- cGCGGGGGCG-CGGCGGgccgggcucCGGCcaGCCCc -3'
miRNA:   3'- -UGCCCCCGCuGUCGCCa--------GCUG--UGGGu -5'
5175 3' -62.3 NC_001798.1 + 3214 0.66 0.623079
Target:  5'- gGCGGGcGCGGCgcucaggcgccccagGGCGG-CGAgCACCCc -3'
miRNA:   3'- -UGCCCcCGCUG---------------UCGCCaGCU-GUGGGu -5'
5175 3' -62.3 NC_001798.1 + 3317 0.72 0.310241
Target:  5'- aAC-GGGGCGGCGGCGG-CGGCGggcuuCCCGc -3'
miRNA:   3'- -UGcCCCCGCUGUCGCCaGCUGU-----GGGU- -5'
5175 3' -62.3 NC_001798.1 + 3891 0.67 0.580294
Target:  5'- cCGGGGGCG--GGgGGcCGGC-CCCGg -3'
miRNA:   3'- uGCCCCCGCugUCgCCaGCUGuGGGU- -5'
5175 3' -62.3 NC_001798.1 + 4086 0.66 0.638697
Target:  5'- cGCGGGGGUccgGGCcggGGCGGgcUCGGC-CCUg -3'
miRNA:   3'- -UGCCCCCG---CUG---UCGCC--AGCUGuGGGu -5'
5175 3' -62.3 NC_001798.1 + 6002 0.69 0.47713
Target:  5'- gGCGGagaccGGGaCGGCAGCGG-CGGCAUCgCGa -3'
miRNA:   3'- -UGCC-----CCC-GCUGUCGCCaGCUGUGG-GU- -5'
5175 3' -62.3 NC_001798.1 + 10291 0.66 0.638697
Target:  5'- -gGGGGGCGACGGgGGgaCGACGg--- -3'
miRNA:   3'- ugCCCCCGCUGUCgCCa-GCUGUgggu -5'
5175 3' -62.3 NC_001798.1 + 11176 0.67 0.609426
Target:  5'- gAUGGGGGCGGuggGGCGGgccugcCGAacgGCCCGc -3'
miRNA:   3'- -UGCCCCCGCUg--UCGCCa-----GCUg--UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 11458 0.66 0.667923
Target:  5'- cGCGGGGGCGccuguauCGGCGc-UGGCAUCUAu -3'
miRNA:   3'- -UGCCCCCGCu------GUCGCcaGCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 12039 0.66 0.667923
Target:  5'- gGCGGGGGCau--GCGGUCaguGugACCa- -3'
miRNA:   3'- -UGCCCCCGcuguCGCCAG---CugUGGgu -5'
5175 3' -62.3 NC_001798.1 + 12369 0.67 0.599692
Target:  5'- cGCGGuGGCuaaucgucggGACAGCGGUgCG-CGCCCc -3'
miRNA:   3'- -UGCCcCCG----------CUGUCGCCA-GCuGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 12605 0.66 0.619176
Target:  5'- uUGGGGGCcaucugagcGCGGCGG-CG-UACCCAa -3'
miRNA:   3'- uGCCCCCGc--------UGUCGCCaGCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 12718 0.77 0.165924
Target:  5'- gGCGGGGGCGugGuGCGGcgCGACGuCCUg -3'
miRNA:   3'- -UGCCCCCGCugU-CGCCa-GCUGU-GGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.