miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5175 5' -54.6 NC_001798.1 + 122358 0.66 0.959475
Target:  5'- cGGUGGcGUGggGCgGGCGACGc----- -3'
miRNA:   3'- -CCACC-CACagCGgCCGCUGUuuacuc -5'
5175 5' -54.6 NC_001798.1 + 117687 0.66 0.951799
Target:  5'- cGGcGGcGUGUaCGCgGGgGACAAG-GAGg -3'
miRNA:   3'- -CCaCC-CACA-GCGgCCgCUGUUUaCUC- -5'
5175 5' -54.6 NC_001798.1 + 153007 0.66 0.951799
Target:  5'- --cGGGgcgGUCGCCGG-GGCGGAguccGGGc -3'
miRNA:   3'- ccaCCCa--CAGCGGCCgCUGUUUa---CUC- -5'
5175 5' -54.6 NC_001798.1 + 43963 0.66 0.951799
Target:  5'- --aGGGUGUCGg-GGCGugGGucGUGGGg -3'
miRNA:   3'- ccaCCCACAGCggCCGCugUU--UACUC- -5'
5175 5' -54.6 NC_001798.1 + 113957 0.66 0.943204
Target:  5'- cGUGGGUuguuagucgcGUcCGCCGGCGG----UGAGg -3'
miRNA:   3'- cCACCCA----------CA-GCGGCCGCUguuuACUC- -5'
5175 5' -54.6 NC_001798.1 + 16057 0.66 0.943204
Target:  5'- cGUGGuagGUCGCUGGgGGCGGcgggcgucuGUGGGg -3'
miRNA:   3'- cCACCca-CAGCGGCCgCUGUU---------UACUC- -5'
5175 5' -54.6 NC_001798.1 + 44854 0.67 0.938554
Target:  5'- gGGUGGGggaaaGCCGGCG-CAGAg--- -3'
miRNA:   3'- -CCACCCacag-CGGCCGCuGUUUacuc -5'
5175 5' -54.6 NC_001798.1 + 144825 0.67 0.928542
Target:  5'- -cUGGGUGUCgGCCGGaaACAcagAGUGAc -3'
miRNA:   3'- ccACCCACAG-CGGCCgcUGU---UUACUc -5'
5175 5' -54.6 NC_001798.1 + 34603 0.67 0.917575
Target:  5'- cGGUGGGacgcgGgcaaagggCGgCGGCGGCGGggGGGg -3'
miRNA:   3'- -CCACCCa----Ca-------GCgGCCGCUGUUuaCUC- -5'
5175 5' -54.6 NC_001798.1 + 149247 0.67 0.911734
Target:  5'- cGG-GGGcGUCGCCGGcCGGCGc--GGGc -3'
miRNA:   3'- -CCaCCCaCAGCGGCC-GCUGUuuaCUC- -5'
5175 5' -54.6 NC_001798.1 + 4419 0.67 0.911137
Target:  5'- --cGGGgGUCG-CGGCGACAGgcuggccAUGGGg -3'
miRNA:   3'- ccaCCCaCAGCgGCCGCUGUU-------UACUC- -5'
5175 5' -54.6 NC_001798.1 + 8548 0.68 0.899345
Target:  5'- cGUGGG--UCG-CGGCGAgGGGUGGGg -3'
miRNA:   3'- cCACCCacAGCgGCCGCUgUUUACUC- -5'
5175 5' -54.6 NC_001798.1 + 122234 0.68 0.892801
Target:  5'- gGGUGGGaagcucUgGCCGGCGGCGAccGGc -3'
miRNA:   3'- -CCACCCac----AgCGGCCGCUGUUuaCUc -5'
5175 5' -54.6 NC_001798.1 + 33279 0.68 0.886029
Target:  5'- uGGUGGGUGggcggGCUGGCuGGCGGGUa-- -3'
miRNA:   3'- -CCACCCACag---CGGCCG-CUGUUUAcuc -5'
5175 5' -54.6 NC_001798.1 + 12861 0.68 0.885339
Target:  5'- uGGU-GGUGUCGgacagcuCCGGCGGCAGcaGGGu -3'
miRNA:   3'- -CCAcCCACAGC-------GGCCGCUGUUuaCUC- -5'
5175 5' -54.6 NC_001798.1 + 57743 0.68 0.879032
Target:  5'- cGGUGGGcG-CGcCCGGCGcaGCGAG-GAGg -3'
miRNA:   3'- -CCACCCaCaGC-GGCCGC--UGUUUaCUC- -5'
5175 5' -54.6 NC_001798.1 + 31366 0.68 0.879032
Target:  5'- gGGUGGGcgaaGaCGCC-GCGGCGGcgGAGg -3'
miRNA:   3'- -CCACCCa---CaGCGGcCGCUGUUuaCUC- -5'
5175 5' -54.6 NC_001798.1 + 36145 0.69 0.832632
Target:  5'- cGGUGGGg--CG-CGGCGGCGgucggGGUGGGg -3'
miRNA:   3'- -CCACCCacaGCgGCCGCUGU-----UUACUC- -5'
5175 5' -54.6 NC_001798.1 + 148410 0.71 0.770373
Target:  5'- cGGgcgGGGUGggCGCCGG-GGCGggGGUGGGc -3'
miRNA:   3'- -CCa--CCCACa-GCGGCCgCUGU--UUACUC- -5'
5175 5' -54.6 NC_001798.1 + 101850 0.71 0.760915
Target:  5'- cGUGGGUccCGgCGGCGGCGGAgGGGg -3'
miRNA:   3'- cCACCCAcaGCgGCCGCUGUUUaCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.