Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5181 | 3' | -55 | NC_001798.1 | + | 103668 | 1.06 | 0.004538 |
Target: 5'- cAAGGGAAUACAGCGAUGCCCCCGAACc -3' miRNA: 3'- -UUCCCUUAUGUCGCUACGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 15259 | 0.8 | 0.232604 |
Target: 5'- uGGGGGggUACgGGCGGUGCCCCggguucCGGGCg -3' miRNA: 3'- -UUCCCuuAUG-UCGCUACGGGG------GCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 31871 | 0.76 | 0.390274 |
Target: 5'- gGAGGGG--GCGGCGGcccGCCCCCGGAa -3' miRNA: 3'- -UUCCCUuaUGUCGCUa--CGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 73073 | 0.74 | 0.511238 |
Target: 5'- gGGGGGAcUACAGCcuGggGCCCCUGggUc -3' miRNA: 3'- -UUCCCUuAUGUCG--CuaCGGGGGCuuG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 125520 | 0.73 | 0.572148 |
Target: 5'- aAAGGGAcgcGCAGCGcAUcGCCgCCGAGCg -3' miRNA: 3'- -UUCCCUua-UGUCGC-UA-CGGgGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 49268 | 0.73 | 0.582492 |
Target: 5'- uGGGGGGAUGC-GCac-GUCCCCGAGCg -3' miRNA: 3'- -UUCCCUUAUGuCGcuaCGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 78259 | 0.72 | 0.592874 |
Target: 5'- -cGGGcgcucgGCGGCG-UGCCCCUGGACc -3' miRNA: 3'- uuCCCuua---UGUCGCuACGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 15366 | 0.72 | 0.613719 |
Target: 5'- gGGGGGAAUcggccgugggcGCGGCGGaggcGCCCaCCGGACc -3' miRNA: 3'- -UUCCCUUA-----------UGUCGCUa---CGGG-GGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 14284 | 0.72 | 0.645075 |
Target: 5'- uGAGGGGG-ACGGCaaaGCCCCCGGAa -3' miRNA: 3'- -UUCCCUUaUGUCGcuaCGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 27195 | 0.71 | 0.68669 |
Target: 5'- cGGGGGGAgggGCGGgGGaaGCCCCCGGGg -3' miRNA: 3'- -UUCCCUUa--UGUCgCUa-CGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 43334 | 0.71 | 0.68669 |
Target: 5'- uGGGGGGcgGCAGUGccGCCCCCc-GCg -3' miRNA: 3'- -UUCCCUuaUGUCGCuaCGGGGGcuUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 152808 | 0.71 | 0.696999 |
Target: 5'- cGAGGGAGUaauuacgcggGgAGCGAgggGCCgUCCGAACg -3' miRNA: 3'- -UUCCCUUA----------UgUCGCUa--CGG-GGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 129359 | 0.71 | 0.696999 |
Target: 5'- -cGGGcc--UGGCGggGCCCCCGGACc -3' miRNA: 3'- uuCCCuuauGUCGCuaCGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 38136 | 0.7 | 0.707251 |
Target: 5'- gAAGGGAGUGCuGCGA-GUCCuuGuACa -3' miRNA: 3'- -UUCCCUUAUGuCGCUaCGGGggCuUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 126621 | 0.7 | 0.726539 |
Target: 5'- cGGGGGggUACGGCGAggUGCaguugauUCgCGAACa -3' miRNA: 3'- -UUCCCuuAUGUCGCU--ACG-------GGgGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 71393 | 0.7 | 0.727547 |
Target: 5'- gGAGGGGuuuuuggugGCGGgGGUGCCCgCgCGGACg -3' miRNA: 3'- -UUCCCUua-------UGUCgCUACGGG-G-GCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 124077 | 0.7 | 0.727547 |
Target: 5'- -cGGGAGgagGCGGCGccUGCgCCCCGAc- -3' miRNA: 3'- uuCCCUUa--UGUCGCu-ACG-GGGGCUug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 76344 | 0.7 | 0.727547 |
Target: 5'- -cGGGGc--CAGCcccuaGAUGCCCCCGAGg -3' miRNA: 3'- uuCCCUuauGUCG-----CUACGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 130529 | 0.7 | 0.727547 |
Target: 5'- --cGGug-GCGGCGAUGgCCCCGAGg -3' miRNA: 3'- uucCCuuaUGUCGCUACgGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 99910 | 0.7 | 0.751441 |
Target: 5'- -cGGGAGUACAuGCGGgagcaggaccgcaaGCCCCgGAAUg -3' miRNA: 3'- uuCCCUUAUGU-CGCUa-------------CGGGGgCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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